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The map label for this gene is ymfC [H]

Identifier: 138894802

GI number: 138894802

Start: 1200302

End: 1201090

Strand: Direct

Name: ymfC [H]

Synonym: GTNG_1136

Alternate gene names: 138894802

Gene position: 1200302-1201090 (Clockwise)

Preceding gene: 138894801

Following gene: 138894803

Centisome position: 33.81

GC content: 48.29

Gene sequence:

>789_bases
ATGTCTAATGTCAGAGGTCTGATCTTAAAGGAAATGCGTAACGTGGAGGACGTTGTCATGTCAATCAAATCAGACAACCG
CCATCTTTACTTGCAAGTCATTGATCGTATTAAACACGATATTGAAACTGGGGTATACAAAGAGCGGCAAAAATTGCCAT
CTGAGTTTGAGCTCGCCAAACAGCTCGGCGTCAGCCGGGCGACGTTGCGGGAGGCGCTTCGGGTGCTTGAGGAAGAAAAC
ATCATCATCCGCCGTCATGGCGTCGGAACGTTTGTCAATGCCCGCCCGCTGTTTACATCCGGCATTGAGCAGCTCTCAAG
CGTGACCGACATGATCCGTCAAGCTGGGCGCAAACCGGGGACGATTTTTTTGTCTTCCTCCATCCAACAGCCGACGGAAG
ATGATATGCGCCGCTTTCAATGCCAGCCGGATGACGAGATTTTGCTCATCGAGCGAGTGCGTACGGCCAATGGGGAGCCA
GTCGTCTATTGCCTTGATAAAATTTTGTGCAAATATTTGCCAAAAGGCATTTCGTATGAGCATGAGTCGCTGTTTGAAAA
CTTGCACAATCAAGCGCACCGTGATATTGCTTATGCAGTCGCGCGCATTGAGCCGCTCGGCTATCATGAGAAAGTGTCGC
CGATTTTGCAATGTGATCCAGAAACAGCCTTGCTCGTGCTCAAACAAATGCATTTTGACAAAAATGATGAACCGATTTTT
TATTCAACGAACTACTTCCGCTCCGACAAGTTCAGCTTTCACGTAATGAGGAAGCGATTCGGGTTTTAA

Upstream 100 bases:

>100_bases
TGGAAGCGCTACCAACCATATTTCTTTTTTTTCGACAAAATTTGATTACACCTATTTATTTGGTCTGTAAAAAATGTTAT
AGTAATGTCAAAAAGGTTAT

Downstream 100 bases:

>100_bases
AGGGGGTGAAATCGGTACATAGAAAGAGAGCGGAAGTTTCATACTAATTTAGGAACAAATTTTTAATAGGGGGTAATGGA
TGGTGAAAAAGCGATTCGGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSNVRGLILKEMRNVEDVVMSIKSDNRHLYLQVIDRIKHDIETGVYKERQKLPSEFELAKQLGVSRATLREALRVLEEEN
IIIRRHGVGTFVNARPLFTSGIEQLSSVTDMIRQAGRKPGTIFLSSSIQQPTEDDMRRFQCQPDDEILLIERVRTANGEP
VVYCLDKILCKYLPKGISYEHESLFENLHNQAHRDIAYAVARIEPLGYHEKVSPILQCDPETALLVLKQMHFDKNDEPIF
YSTNYFRSDKFSFHVMRKRFGF

Sequences:

>Translated_262_residues
MSNVRGLILKEMRNVEDVVMSIKSDNRHLYLQVIDRIKHDIETGVYKERQKLPSEFELAKQLGVSRATLREALRVLEEEN
IIIRRHGVGTFVNARPLFTSGIEQLSSVTDMIRQAGRKPGTIFLSSSIQQPTEDDMRRFQCQPDDEILLIERVRTANGEP
VVYCLDKILCKYLPKGISYEHESLFENLHNQAHRDIAYAVARIEPLGYHEKVSPILQCDPETALLVLKQMHFDKNDEPIF
YSTNYFRSDKFSFHVMRKRFGF
>Mature_261_residues
SNVRGLILKEMRNVEDVVMSIKSDNRHLYLQVIDRIKHDIETGVYKERQKLPSEFELAKQLGVSRATLREALRVLEEENI
IIRRHGVGTFVNARPLFTSGIEQLSSVTDMIRQAGRKPGTIFLSSSIQQPTEDDMRRFQCQPDDEILLIERVRTANGEPV
VYCLDKILCKYLPKGISYEHESLFENLHNQAHRDIAYAVARIEPLGYHEKVSPILQCDPETALLVLKQMHFDKNDEPIFY
STNYFRSDKFSFHVMRKRFGF

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=239, Percent_Identity=25.1046025104602, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082252, Length=236, Percent_Identity=25, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 30472; Mature: 30341

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVRGLILKEMRNVEDVVMSIKSDNRHLYLQVIDRIKHDIETGVYKERQKLPSEFELAK
CCCHHHHHHHHHHCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
QLGVSRATLREALRVLEEENIIIRRHGVGTFVNARPLFTSGIEQLSSVTDMIRQAGRKPG
HHCCCHHHHHHHHHHHHHCCEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
TIFLSSSIQQPTEDDMRRFQCQPDDEILLIERVRTANGEPVVYCLDKILCKYLPKGISYE
EEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHCCCCCCCC
HESLFENLHNQAHRDIAYAVARIEPLGYHEKVSPILQCDPETALLVLKQMHFDKNDEPIF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHCCCHHHHHHHHHHHCCCCCCCEE
YSTNYFRSDKFSFHVMRKRFGF
EECCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SNVRGLILKEMRNVEDVVMSIKSDNRHLYLQVIDRIKHDIETGVYKERQKLPSEFELAK
CCHHHHHHHHHHCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
QLGVSRATLREALRVLEEENIIIRRHGVGTFVNARPLFTSGIEQLSSVTDMIRQAGRKPG
HHCCCHHHHHHHHHHHHHCCEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
TIFLSSSIQQPTEDDMRRFQCQPDDEILLIERVRTANGEPVVYCLDKILCKYLPKGISYE
EEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHCCCCCCCC
HESLFENLHNQAHRDIAYAVARIEPLGYHEKVSPILQCDPETALLVLKQMHFDKNDEPIF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHCCCHHHHHHHHHHHCCCCCCCEE
YSTNYFRSDKFSFHVMRKRFGF
EECCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]