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The map label for this gene is potC [H]

Identifier: 138894299

GI number: 138894299

Start: 699157

End: 699960

Strand: Direct

Name: potC [H]

Synonym: GTNG_0625

Alternate gene names: 138894299

Gene position: 699157-699960 (Clockwise)

Preceding gene: 138894298

Following gene: 138894300

Centisome position: 19.69

GC content: 49.13

Gene sequence:

>804_bases
ATGAAACGTACACATCGGTGGGGGCGCTTATATTTGCTGGTTGTGTTTGCTATTATGTACACGCCGATTGGGTACTTGAT
GTATTATTCGTTCAACAGCGGCGGGACAATGCACGATTTTCAATCATTCACGTTGGAATGGTATCGCGAGGTATTGTCAG
ATGATCGATTGTTGATCATCGTGCTCAATACGATTGTCGTCGCTTTGTTGTCAGCGGCAGTCGCGACGATTTTGGGCGTC
ATCGGGGCATTGGCCATTTATTATGTCAAGCGGCAACGGACGAAACATACCCTTCTCGCCCTCAACAACGTGCTGATTGT
CAGTCCGGATGTCATTATCGGTGCTTCGTTTTTATTGCTGTTTACGCTGGCTGGCATTAAGCTGGGGTTTACGTCCGTGC
TGTTGTCCCATATCGCCTTTAGCGTGCCAATTGTCGTATTGATGGTGTTGCCAAAACTCGAGGAAATGAGTCCGACGTTA
ATCGATGCGGCGCGCGATTTGGGAGCAGGGCCGTGGCAAGTGCTGTCGGGCGTTGTACTTCCGTTTTTGACGCCGAGCAT
ATGGGCCGGATTTTTTATGGCGCTCACCTATTCGCTTGATGATTTTGCCGTGACATTTTTTGTCACCGGAAACGGCTTCT
CGACGTTATCGGTAGAAATTTATTCACGGGCGCGCCAAGGCATTTCCTTATCAATCAATGCGCTGTCGACATTGCTGTTT
TTGTTTACGATGTTGCTTGTCGTCGGCTATTACGTGCTCAGCCAAAAAGGCGGGAGAATGTATGGGATAGGGGGGCGGAA
GTAG

Upstream 100 bases:

>100_bases
CCCAAGATTGGGGGATGGGGGCAACGATTGCCGTTGTGTTAATGATCGCGATGGCGATCATTGTCTTCTTGACAGGAAGC
GGAAGGAAAGAGGGAAGTCG

Downstream 100 bases:

>100_bases
GTGAAACGGCTTGTTCAAGGATTTGCTGCTATATTCATCGCCGCGTTCGCCCTCATGTTCATGACCCAGCAGCTGAACGA
AGCGGAAGGATATGGAGGCG

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKRTHRWGRLYLLVVFAIMYTPIGYLMYYSFNSGGTMHDFQSFTLEWYREVLSDDRLLIIVLNTIVVALLSAAVATILGV
IGALAIYYVKRQRTKHTLLALNNVLIVSPDVIIGASFLLLFTLAGIKLGFTSVLLSHIAFSVPIVVLMVLPKLEEMSPTL
IDAARDLGAGPWQVLSGVVLPFLTPSIWAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLF
LFTMLLVVGYYVLSQKGGRMYGIGGRK

Sequences:

>Translated_267_residues
MKRTHRWGRLYLLVVFAIMYTPIGYLMYYSFNSGGTMHDFQSFTLEWYREVLSDDRLLIIVLNTIVVALLSAAVATILGV
IGALAIYYVKRQRTKHTLLALNNVLIVSPDVIIGASFLLLFTLAGIKLGFTSVLLSHIAFSVPIVVLMVLPKLEEMSPTL
IDAARDLGAGPWQVLSGVVLPFLTPSIWAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLF
LFTMLLVVGYYVLSQKGGRMYGIGGRK
>Mature_267_residues
MKRTHRWGRLYLLVVFAIMYTPIGYLMYYSFNSGGTMHDFQSFTLEWYREVLSDDRLLIIVLNTIVVALLSAAVATILGV
IGALAIYYVKRQRTKHTLLALNNVLIVSPDVIIGASFLLLFTLAGIKLGFTSVLLSHIAFSVPIVVLMVLPKLEEMSPTL
IDAARDLGAGPWQVLSGVVLPFLTPSIWAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLF
LFTMLLVVGYYVLSQKGGRMYGIGGRK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=230, Percent_Identity=35.6521739130435, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1787081, Length=239, Percent_Identity=33.8912133891213, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788764, Length=179, Percent_Identity=36.3128491620112, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787714, Length=247, Percent_Identity=28.3400809716599, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29517; Mature: 29517

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTHRWGRLYLLVVFAIMYTPIGYLMYYSFNSGGTMHDFQSFTLEWYREVLSDDRLLII
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEH
VLNTIVVALLSAAVATILGVIGALAIYYVKRQRTKHTLLALNNVLIVSPDVIIGASFLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH
FTLAGIKLGFTSVLLSHIAFSVPIVVLMVLPKLEEMSPTLIDAARDLGAGPWQVLSGVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHH
PFLTPSIWAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLF
HHHCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHHCCCEEEHHHHHHHHH
LFTMLLVVGYYVLSQKGGRMYGIGGRK
HHHHHHHHHHHHHHCCCCEEECCCCCC
>Mature Secondary Structure
MKRTHRWGRLYLLVVFAIMYTPIGYLMYYSFNSGGTMHDFQSFTLEWYREVLSDDRLLII
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEH
VLNTIVVALLSAAVATILGVIGALAIYYVKRQRTKHTLLALNNVLIVSPDVIIGASFLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH
FTLAGIKLGFTSVLLSHIAFSVPIVVLMVLPKLEEMSPTLIDAARDLGAGPWQVLSGVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHH
PFLTPSIWAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLF
HHHCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHHCCCEEEHHHHHHHHH
LFTMLLVVGYYVLSQKGGRMYGIGGRK
HHHHHHHHHHHHHHCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]