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The map label for this gene is potB [H]

Identifier: 138894298

GI number: 138894298

Start: 698354

End: 699160

Strand: Direct

Name: potB [H]

Synonym: GTNG_0624

Alternate gene names: 138894298

Gene position: 698354-699160 (Clockwise)

Preceding gene: 138894297

Following gene: 138894299

Centisome position: 19.67

GC content: 47.09

Gene sequence:

>807_bases
ATGGAACGGGCATGGCGGAACTGGTATTTGATCCCCTACGTGGTATGGCTTGTTTTGTTTGTTATCGCACCGATCGTGTT
TTTAGTGTATGAATCGTTTTTGGATATCGATGGGCAGTGGACGATAGCCAATTATGAAAAAGTGCTGACGCCCATTTATT
TGAAAATGATGGCTTATTCATTCTGGTACGCATTTTTAATTACCCTTGTATCATTATTGATCGGTTATCCAACTGCCTAT
TGGTTGACAAAAACAAAGCATAAACAGCTATGGCTGTTGTTGCTCATTTTGCCGATGTGGGTAAATTTGTTGTTGAAAGT
ATATGCGTTTTTAGGATTGTTCGGCACGTACGGGTTGGCCAACGCCTTCTTGCAAGCGATCGGCATCGGAGCGCGGCAGC
TGTTGTTTACTGATTTCAGCTTTGTGTTCGTCTCGGTGTATATTTTTATTCCGTTTATGGTGCTGCCAATTTTTAATGCG
TTAGAAGAATTGCCGCCGACCTTGATTGATGCTGCCCGCGATTTGGGCGCTTCGGCGTGGACAACGTTTCGCCGTGTCGT
TTTCCCGCTGACGCTTGGCGGGGTGAAAGCCGGCTGCCAAGCGGTGTTTATCCCCGCGTTGTCGTTGTTTATGATTACGC
GTCTTGTTGCGGGCAATCGCGTCATTACGCTTGGTACCGCCATTGAACAGCATTTTCTCGTCACCCAAGATTGGGGGATG
GGGGCAACGATTGCCGTTGTGTTAATGATCGCGATGGCGATCATTGTCTTCTTGACAGGAAGCGGAAGGAAAGAGGGAAG
TCGATGA

Upstream 100 bases:

>100_bases
ATTCGACAAGAAGAGCAGAAGTGGGGGAAACGGTCGGTCTCCGGTTTGAACCAGAGGCGATTCATGTCATGCGAGTCGAG
AGGGAGAAAGGAGACGTAGA

Downstream 100 bases:

>100_bases
AACGTACACATCGGTGGGGGCGCTTATATTTGCTGGTTGTGTTTGCTATTATGTACACGCCGATTGGGTACTTGATGTAT
TATTCGTTCAACAGCGGCGG

Product: spermidine/putrescine ABC transporter permease

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MERAWRNWYLIPYVVWLVLFVIAPIVFLVYESFLDIDGQWTIANYEKVLTPIYLKMMAYSFWYAFLITLVSLLIGYPTAY
WLTKTKHKQLWLLLLILPMWVNLLLKVYAFLGLFGTYGLANAFLQAIGIGARQLLFTDFSFVFVSVYIFIPFMVLPIFNA
LEELPPTLIDAARDLGASAWTTFRRVVFPLTLGGVKAGCQAVFIPALSLFMITRLVAGNRVITLGTAIEQHFLVTQDWGM
GATIAVVLMIAMAIIVFLTGSGRKEGSR

Sequences:

>Translated_268_residues
MERAWRNWYLIPYVVWLVLFVIAPIVFLVYESFLDIDGQWTIANYEKVLTPIYLKMMAYSFWYAFLITLVSLLIGYPTAY
WLTKTKHKQLWLLLLILPMWVNLLLKVYAFLGLFGTYGLANAFLQAIGIGARQLLFTDFSFVFVSVYIFIPFMVLPIFNA
LEELPPTLIDAARDLGASAWTTFRRVVFPLTLGGVKAGCQAVFIPALSLFMITRLVAGNRVITLGTAIEQHFLVTQDWGM
GATIAVVLMIAMAIIVFLTGSGRKEGSR
>Mature_268_residues
MERAWRNWYLIPYVVWLVLFVIAPIVFLVYESFLDIDGQWTIANYEKVLTPIYLKMMAYSFWYAFLITLVSLLIGYPTAY
WLTKTKHKQLWLLLLILPMWVNLLLKVYAFLGLFGTYGLANAFLQAIGIGARQLLFTDFSFVFVSVYIFIPFMVLPIFNA
LEELPPTLIDAARDLGASAWTTFRRVVFPLTLGGVKAGCQAVFIPALSLFMITRLVAGNRVITLGTAIEQHFLVTQDWGM
GATIAVVLMIAMAIIVFLTGSGRKEGSR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787369, Length=251, Percent_Identity=37.8486055776892, Blast_Score=170, Evalue=7e-44,
Organism=Escherichia coli, GI1787080, Length=223, Percent_Identity=36.7713004484305, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787713, Length=227, Percent_Identity=30.8370044052863, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30348; Mature: 30348

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure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CHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]