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The map label for this gene is ydiU [C]

Identifier: 138894117

GI number: 138894117

Start: 495729

End: 497186

Strand: Direct

Name: ydiU [C]

Synonym: GTNG_0443

Alternate gene names: 138894117

Gene position: 495729-497186 (Clockwise)

Preceding gene: 138894116

Following gene: 138894118

Centisome position: 13.96

GC content: 53.77

Gene sequence:

>1458_bases
ATGTTGGAAGCAAGGTGGAAGTTCGATAATAGTTATGCAAGGCTGCCAGAACGCTTGTTTAGCAACGTTCTCCCTACGCC
AGTGCGTGCGCCGAAATTGGTGGTGCTCAACCGTTCGCTCACAGCCGAGCTTGGGCTGAATGAGGAAGCTTTACGAAGCG
AAGAAGGGGTGGAAGTGTTAGCGGGAAATCGGATTCCGGACGGGGCTAGGCCGTTAGCGCAGGCGTATGCTGGTCATCAG
TTCGGTTATTTCACCATGCTTGGGGACGGACGGGCAGTGTTGCTTGGCGAGCACATCACTCCAAGCGGCAAGCGGGTCGA
CATTCAACTAAAAGGATCTGGGCGGACGCCGTACTCTCGTGGCGGAGATGGGCGTGCGGCGCTCGGGCCGATGCTGAGGG
AGTATATCGTGAGCGAGGCAATGCATGCCCTCGGCATTCCGACGACCCGAAGCTTGGCGGTCGTGACAACAGGAGAGACC
ATTATACGCGAAACTGAACTGCCTGGGGCGATTTTAACCCGCGTTGCGTCGAGCCATTTGCGTGTCGGCACATTTCAATA
TGCAGCGCAGTGGGGGACGAGAGAAGAGCTGTGCGCGTTAGCTGATTATGCGCTTGAGCGGCATTTCCCTGAGTTTGAGG
CGGTTGCGAACCGCTATTTGTTTTTACTTGAACAAGTCATCAAGCGCCAAGCGGAATTGATCGCAAAATGGCAGCTTGTT
GGCTTTGTCCATGGGGTGATGAACACCGACAATATGACGATCAGCGGGGAAACAATCGATTACGGGCCGTGCGCGTTTAT
GGACACGTATGACTTGAAGACAGTGTTTAGCTCAATCGATACGGAAGGACGGTACGCGTACGGTCATCAGCCGTATATCG
GAGGTTGGAACTTGGCTCGTTTTGCGGAGAGCTTGTTGCCGCTGTTGGATGATAAGAAGGAAAAAGCGGTGGAGTTGGCT
GAAGAAGCGCTTGGCCAATATTCAAAATGGTATGAGTACTATTGGCTTGGCGGGATGAGAGCAAAATTGGGACTTGCCGA
GGAACAGGAACACGATGCAGAGTTGATCACCGAGTTGTTGCGGTTGATGGAAGAATACCGTGCAGACTATACGAACACAT
TCCGAGCATTGACATTAGGTGAGTACACTGGAATGGAGCTGTTTGACACTTCTGAGTTTCGTGAGTGGCACGAGCGGTGG
CAAACGAGGCTTAGCAAGGAATCAGTCTCGCGAGAAGAAGCGTATGAACGGATGCGCCGTCACAATCCAGCGGTCATTCC
GCGCAATCATCGGGTTGAAGAGGCGTTGGCTGCTGCGGTCAATTGTGGAGACTATCAGGTCATGGCTCGACTCCTTAAAG
CGTTGGCCGATCCGTACGCTTACTCGCCGGAACAAGCGGAATACGCCGAACTGCCGCCGCCATCTGACCAGCCGTATCGG
ACGTTTTGCGGGACGTAA

Upstream 100 bases:

>100_bases
CATCCTTACGTTTCCTCATGAAGCGGTTTATAATGCCACCAACTTTGCCGTACAATAAACTCATACAATAAAGAGCATTG
GGTAGAAAAAGAAGGTGACC

Downstream 100 bases:

>100_bases
TAAAAGGGACTTAGCAGCTCTTTTTTACTGTCAGTCCGGTGACGCTTTAATTCAATCATAAAGGTGAAACGAAACAATAC
GAAAACAAGAAAAGGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MLEARWKFDNSYARLPERLFSNVLPTPVRAPKLVVLNRSLTAELGLNEEALRSEEGVEVLAGNRIPDGARPLAQAYAGHQ
FGYFTMLGDGRAVLLGEHITPSGKRVDIQLKGSGRTPYSRGGDGRAALGPMLREYIVSEAMHALGIPTTRSLAVVTTGET
IIRETELPGAILTRVASSHLRVGTFQYAAQWGTREELCALADYALERHFPEFEAVANRYLFLLEQVIKRQAELIAKWQLV
GFVHGVMNTDNMTISGETIDYGPCAFMDTYDLKTVFSSIDTEGRYAYGHQPYIGGWNLARFAESLLPLLDDKKEKAVELA
EEALGQYSKWYEYYWLGGMRAKLGLAEEQEHDAELITELLRLMEEYRADYTNTFRALTLGEYTGMELFDTSEFREWHERW
QTRLSKESVSREEAYERMRRHNPAVIPRNHRVEEALAAAVNCGDYQVMARLLKALADPYAYSPEQAEYAELPPPSDQPYR
TFCGT

Sequences:

>Translated_485_residues
MLEARWKFDNSYARLPERLFSNVLPTPVRAPKLVVLNRSLTAELGLNEEALRSEEGVEVLAGNRIPDGARPLAQAYAGHQ
FGYFTMLGDGRAVLLGEHITPSGKRVDIQLKGSGRTPYSRGGDGRAALGPMLREYIVSEAMHALGIPTTRSLAVVTTGET
IIRETELPGAILTRVASSHLRVGTFQYAAQWGTREELCALADYALERHFPEFEAVANRYLFLLEQVIKRQAELIAKWQLV
GFVHGVMNTDNMTISGETIDYGPCAFMDTYDLKTVFSSIDTEGRYAYGHQPYIGGWNLARFAESLLPLLDDKKEKAVELA
EEALGQYSKWYEYYWLGGMRAKLGLAEEQEHDAELITELLRLMEEYRADYTNTFRALTLGEYTGMELFDTSEFREWHERW
QTRLSKESVSREEAYERMRRHNPAVIPRNHRVEEALAAAVNCGDYQVMARLLKALADPYAYSPEQAEYAELPPPSDQPYR
TFCGT
>Mature_485_residues
MLEARWKFDNSYARLPERLFSNVLPTPVRAPKLVVLNRSLTAELGLNEEALRSEEGVEVLAGNRIPDGARPLAQAYAGHQ
FGYFTMLGDGRAVLLGEHITPSGKRVDIQLKGSGRTPYSRGGDGRAALGPMLREYIVSEAMHALGIPTTRSLAVVTTGET
IIRETELPGAILTRVASSHLRVGTFQYAAQWGTREELCALADYALERHFPEFEAVANRYLFLLEQVIKRQAELIAKWQLV
GFVHGVMNTDNMTISGETIDYGPCAFMDTYDLKTVFSSIDTEGRYAYGHQPYIGGWNLARFAESLLPLLDDKKEKAVELA
EEALGQYSKWYEYYWLGGMRAKLGLAEEQEHDAELITELLRLMEEYRADYTNTFRALTLGEYTGMELFDTSEFREWHERW
QTRLSKESVSREEAYERMRRHNPAVIPRNHRVEEALAAAVNCGDYQVMARLLKALADPYAYSPEQAEYAELPPPSDQPYR
TFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=391, Percent_Identity=40.920716112532, Blast_Score=267, Evalue=2e-71,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=39.9581589958159, Blast_Score=333, Evalue=1e-92,
Organism=Saccharomyces cerevisiae, GI6325034, Length=455, Percent_Identity=29.2307692307692, Blast_Score=176, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54865; Mature: 54865

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEARWKFDNSYARLPERLFSNVLPTPVRAPKLVVLNRSLTAELGLNEEALRSEEGVEVL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCHHHHHCCCCCEEE
AGNRIPDGARPLAQAYAGHQFGYFTMLGDGRAVLLGEHITPSGKRVDIQLKGSGRTPYSR
ECCCCCCCHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCC
GGDGRAALGPMLREYIVSEAMHALGIPTTRSLAVVTTGETIIRETELPGAILTRVASSHL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHH
RVGTFQYAAQWGTREELCALADYALERHFPEFEAVANRYLFLLEQVIKRQAELIAKWQLV
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFVHGVMNTDNMTISGETIDYGPCAFMDTYDLKTVFSSIDTEGRYAYGHQPYIGGWNLAR
HHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCHHH
FAESLLPLLDDKKEKAVELAEEALGQYSKWYEYYWLGGMRAKLGLAEEQEHDAELITELL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCHHHHHHHHHHHH
RLMEEYRADYTNTFRALTLGEYTGMELFDTSEFREWHERWQTRLSKESVSREEAYERMRR
HHHHHHCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
HNPAVIPRNHRVEEALAAAVNCGDYQVMARLLKALADPYAYSPEQAEYAELPPPSDQPYR
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
TFCGT
HCCCC
>Mature Secondary Structure
MLEARWKFDNSYARLPERLFSNVLPTPVRAPKLVVLNRSLTAELGLNEEALRSEEGVEVL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCHHHHHCCCCCEEE
AGNRIPDGARPLAQAYAGHQFGYFTMLGDGRAVLLGEHITPSGKRVDIQLKGSGRTPYSR
ECCCCCCCHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCC
GGDGRAALGPMLREYIVSEAMHALGIPTTRSLAVVTTGETIIRETELPGAILTRVASSHL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHH
RVGTFQYAAQWGTREELCALADYALERHFPEFEAVANRYLFLLEQVIKRQAELIAKWQLV
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFVHGVMNTDNMTISGETIDYGPCAFMDTYDLKTVFSSIDTEGRYAYGHQPYIGGWNLAR
HHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCHHH
FAESLLPLLDDKKEKAVELAEEALGQYSKWYEYYWLGGMRAKLGLAEEQEHDAELITELL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCHHHHHHHHHHHH
RLMEEYRADYTNTFRALTLGEYTGMELFDTSEFREWHERWQTRLSKESVSREEAYERMRR
HHHHHHCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
HNPAVIPRNHRVEEALAAAVNCGDYQVMARLLKALADPYAYSPEQAEYAELPPPSDQPYR
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
TFCGT
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA