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The map label for this gene is agaR [H]

Identifier: 13474907

GI number: 13474907

Start: 4761193

End: 4761984

Strand: Direct

Name: agaR [H]

Synonym: mlr5891

Alternate gene names: 13474907

Gene position: 4761193-4761984 (Clockwise)

Preceding gene: 13474906

Following gene: 13474908

Centisome position: 67.67

GC content: 57.58

Gene sequence:

>792_bases
ATGTCGCTTAGTTACAATCGTCATAAAAGGCTCGTTGAAATCATCCAGGCGAATGGCGAAGTGCGCATCCGAGATTTGAT
GCAGCGGTTCAATATTTCAGAAGAGACTGCGCGGCGGGATATCAAACGGCTCGAGCAGGATGGCTTGGTCGCACGGGTCC
ATGGTGGCGCGGTCGCAACGCAACAGCCAAAGCTGCTGGCCATCTCATCGCGAGCTGTTTCCGAGCGCGCGGAAAAAAGC
ACCATCGCTGAGATCGCCCTGGGTCTTCTGAAGCCCGGCCAGAATCTCTTTTTCGGGGGCGGCAGCACCATTCTGTCGTT
GGCCAGCCGCATATCGGCCCTCCCGGAAATGCGCGTCGTCACCAACATGGTCGATACTGCCATCGCCGCGGCCGAAGGCC
ATCGGCATCGCGTTGTCATGCTGGGGGGCGATTTCAATGTCGATTTCCGGACCGTAAGCGGATTCACCGCCTTGCGTACA
CTCCGCGAACAGCAGATCGACGTCGCATTTATCGGCGTCAATGCGGTGCATCCGAATGGCGTCTTCGACCATGAACAGGT
CGGACAGGAGCTTGCTGCGACGCTCTGCGAGCAAGCACGGAAAATTGTCATTCTCGCCGATCACAGCAAATTCGGCTTGT
CGGCGCGCTACCGCATCCTGCCCCATTCGGCGATTACCGCGATCATCACCGACCGGAGGCCTGCATCGGACATGCTGGAC
AAGATCGAAGCCGCCGGTGTTGAAGTTCTATATCCGCAAAACCGTCACAACCCCGCACTTGTCTCTACTTGA

Upstream 100 bases:

>100_bases
CACCTTAAGCCGCTCAACGGCCTCTGAGAGTGACGCCCTGACGTGACATTTGCGCAGCGAACTGAATAGTCTTTTTTCGA
ATGCCGCGAGAGAGAGAAGC

Downstream 100 bases:

>100_bases
TCCTCTTCTTTCAGCCCGCACGGCTGCCCCAATCGTGAAACATTTTTTTCCATTTGATTTCAATAACCAACACAATCCGT
CTCAAACATGCAAAAAACCG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSLSYNRHKRLVEIIQANGEVRIRDLMQRFNISEETARRDIKRLEQDGLVARVHGGAVATQQPKLLAISSRAVSERAEKS
TIAEIALGLLKPGQNLFFGGGSTILSLASRISALPEMRVVTNMVDTAIAAAEGHRHRVVMLGGDFNVDFRTVSGFTALRT
LREQQIDVAFIGVNAVHPNGVFDHEQVGQELAATLCEQARKIVILADHSKFGLSARYRILPHSAITAIITDRRPASDMLD
KIEAAGVEVLYPQNRHNPALVST

Sequences:

>Translated_263_residues
MSLSYNRHKRLVEIIQANGEVRIRDLMQRFNISEETARRDIKRLEQDGLVARVHGGAVATQQPKLLAISSRAVSERAEKS
TIAEIALGLLKPGQNLFFGGGSTILSLASRISALPEMRVVTNMVDTAIAAAEGHRHRVVMLGGDFNVDFRTVSGFTALRT
LREQQIDVAFIGVNAVHPNGVFDHEQVGQELAATLCEQARKIVILADHSKFGLSARYRILPHSAITAIITDRRPASDMLD
KIEAAGVEVLYPQNRHNPALVST
>Mature_262_residues
SLSYNRHKRLVEIIQANGEVRIRDLMQRFNISEETARRDIKRLEQDGLVARVHGGAVATQQPKLLAISSRAVSERAEKST
IAEIALGLLKPGQNLFFGGGSTILSLASRISALPEMRVVTNMVDTAIAAAEGHRHRVVMLGGDFNVDFRTVSGFTALRTL
REQQIDVAFIGVNAVHPNGVFDHEQVGQELAATLCEQARKIVILADHSKFGLSARYRILPHSAITAIITDRRPASDMLDK
IEAAGVEVLYPQNRHNPALVST

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=248, Percent_Identity=27.4193548387097, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082344, Length=248, Percent_Identity=27.8225806451613, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1789829, Length=231, Percent_Identity=26.4069264069264, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789059, Length=246, Percent_Identity=25.609756097561, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788069, Length=249, Percent_Identity=25.3012048192771, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI226510968, Length=229, Percent_Identity=28.3842794759825, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790635, Length=247, Percent_Identity=25.9109311740891, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787540, Length=237, Percent_Identity=26.1603375527426, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789170, Length=239, Percent_Identity=24.2677824267782, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790753, Length=256, Percent_Identity=23.4375, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28861; Mature: 28729

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSYNRHKRLVEIIQANGEVRIRDLMQRFNISEETARRDIKRLEQDGLVARVHGGAVAT
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCEEEC
QQPKLLAISSRAVSERAEKSTIAEIALGLLKPGQNLFFGGGSTILSLASRISALPEMRVV
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHH
TNMVDTAIAAAEGHRHRVVMLGGDFNVDFRTVSGFTALRTLREQQIDVAFIGVNAVHPNG
HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEEEEECCCC
VFDHEQVGQELAATLCEQARKIVILADHSKFGLSARYRILPHSAITAIITDRRPASDMLD
CCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCHHEEEEEECCCCHHHHHH
KIEAAGVEVLYPQNRHNPALVST
HHHHCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SLSYNRHKRLVEIIQANGEVRIRDLMQRFNISEETARRDIKRLEQDGLVARVHGGAVAT
CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCEEEC
QQPKLLAISSRAVSERAEKSTIAEIALGLLKPGQNLFFGGGSTILSLASRISALPEMRVV
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHH
TNMVDTAIAAAEGHRHRVVMLGGDFNVDFRTVSGFTALRTLREQQIDVAFIGVNAVHPNG
HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEEEEECCCC
VFDHEQVGQELAATLCEQARKIVILADHSKFGLSARYRILPHSAITAIITDRRPASDMLD
CCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCHHEEEEEECCCCHHHHHH
KIEAAGVEVLYPQNRHNPALVST
HHHHCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]