| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is prpE [C]
Identifier: 13474409
GI number: 13474409
Start: 4215669
End: 4217597
Strand: Reverse
Name: prpE [C]
Synonym: mll5286
Alternate gene names: 13474409
Gene position: 4217597-4215669 (Counterclockwise)
Preceding gene: 13474411
Following gene: 13474408
Centisome position: 59.94
GC content: 65.11
Gene sequence:
>1929_bases ATGGTTCCTGGGAGGTTGCCGATGGCTTCACGCTATCACGAGGTCTATGACGGCTGGAAACGCGACCCGGAAAAATTCTG GGCGGACGCCGCCGGCGCCATCGACTGGTATTCGCCCTGGGACAAGGTGTTCGACGCTGACGCCGGCGTCTATGGCCGCT GGTTTACCGGCGCGACATGCAACACCTGTTACAACGCCATCGACCGGCATGTCGCCCGCGGGCGCGCCGACCAGATCGCA CTGATCCATGACAGCGCCATCACCGGAACGGTGAAAAAATTCACCTATGCCGAACTCAAGCGCGAGGTGGTGGCGCTGAC CTCGGTGCTGAAGAACCGGGGCATCGGCAAGGGCGACCGCGTCATCATCTACATGCCGATGGTGGCGGAGGCGGCCATCG CCATGCTTGCCTGCGCCCGCATCGGCGCCGTGCATTCGGTCGTCTTCGGCGGCTTTGCCTCGCATGAACTGGCCACCCGT ATCGACGACGCCAAGCCGAAGCTGATCATCTCGGCCTCCTGCGGCCTGGAGCCGGGCCGGATCGTTGCCTACAAGCCGCT GCTCGACAAGGCGATCGAGATGTCCGGCCACAAGCCGGACGCCTGCCTGATCCTGCAGCGCGACCAGCTGCGCTGCGAGC TGAAGGAGCATTTCGACATCGACTATGCCGACGCCGTCGCGCGCGAACGGGCGGCCGGCGCCAATGTCGACTGCGTGCCG GTGCTGGCCACCGACCCGCTCTACATCATCTACACGTCAGGCACGACCGGCCAGCCGAAGGGCATCGTGCGTGACAATGG CGGCCACATGGTCGCGCTGAAATGGACGATGGAAAACGAGTTCGGCGTCAAGCCGGGCGAAGTGTTCTGGGCAGCGTCCG ATGTCGGCTGGGTCGTCGGCCATTCCTACATCGTCTACGGACCGCTGCTGCATGGCAGCACCAGCGTCCTGTTCGAAGGC AAGCCGATCGGCACGCCCGACGCCGGCACCTACTGGCGGGTCATCTCGGACCATGGCGTGGTCGCGCTGTTCACCGCGCC GACGGCGTTCCGGGCGATCAAGGGCCAGGACCCCAAGGGCGAGTTCGTTCCCAGATACGATCTGTCGAAATTCCGCACGC TGTTCCTCGCCGGCGAGCGCGCCGATCCCGAGACCATCAAATGGGCGGAGCAGAAGCTTAACGTGCCGGTGATCGACCAC TGGTGGCAGACCGAGACCGGTTCGCCGATGACCATCAATCCCGCGGGACTTGGCCTGCTGCCGGTGAAATACGGTTCGCC CGGCGTACCGATGCCGGGCTACGACATCCGCGTGCTGGACGATGCCGGCCACGAAGTGCCGCGCGGCACACTCGGCAATG TCGTGGTCAAGCTGCCACTGCCGGCCGGCTGCCTGCCGACGCTGTGGAACGCCGACGCCCGCTTCCGCCAAGCCTATCTC GACGAGTTTCCCGGCTTCTACAAGACGGCGGACGCCGGCATGATCGACGAGGACGGCTATCTCTACGTGATGGCCCGCAC CGACGACATCATCAATGTCGCCGGCCACCGGCTGTCGACCGGCGCCATGGAAGAGGTGCTGGCCGCTCATCCCGATGTCG CCGAATGCGCCGTCGTCGGCATCGCCGATGCTATGAAGGGGCAAATTCCGCTCGGCTTCGTGGTGCTGAACGCCGGTGTC GCGCGCGGCGGCGACGTCATCGAGAAGGAGGTCGTGGCACTGGTGCGCGAGCGCATCGGGCCGGTCGCCGCTTTCAAAAC GGTGGTGACGATCAAACGCCTGCCCAAGACGCGGTCGGGAAAGATTCTGCGCGGCACCATGCAGAAGATCGCCGACAAGG AGGCGTGGACGATGCCGGCGACGATAGACGACCCGGCCATCCTCGACGAGATCACCGCAGCGATGAAGGCGCGCGGGATC GGGATTTGA
Upstream 100 bases:
>100_bases CACGGTACGGTGCGCCAGAGGTCAAGCCGGCACCCGTCATACGAAAATCAGGGAAGACAGCGCCGGAAAAAACAGCATAG GCTGTTGGCAAAGACGGCAA
Downstream 100 bases:
>100_bases GGCCAGAGCAGTTCCAGGAAAAGTGTGAAACGGTTTTCCGTCCGGAATTGCGTCAAATCAAAGAGTTAGAGTGGGTGGCC GTTTCCGTGAAACGGTGAAC
Product: acetyl-coa synthetase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 642; Mature: 642
Protein sequence:
>642_residues MVPGRLPMASRYHEVYDGWKRDPEKFWADAAGAIDWYSPWDKVFDADAGVYGRWFTGATCNTCYNAIDRHVARGRADQIA LIHDSAITGTVKKFTYAELKREVVALTSVLKNRGIGKGDRVIIYMPMVAEAAIAMLACARIGAVHSVVFGGFASHELATR IDDAKPKLIISASCGLEPGRIVAYKPLLDKAIEMSGHKPDACLILQRDQLRCELKEHFDIDYADAVARERAAGANVDCVP VLATDPLYIIYTSGTTGQPKGIVRDNGGHMVALKWTMENEFGVKPGEVFWAASDVGWVVGHSYIVYGPLLHGSTSVLFEG KPIGTPDAGTYWRVISDHGVVALFTAPTAFRAIKGQDPKGEFVPRYDLSKFRTLFLAGERADPETIKWAEQKLNVPVIDH WWQTETGSPMTINPAGLGLLPVKYGSPGVPMPGYDIRVLDDAGHEVPRGTLGNVVVKLPLPAGCLPTLWNADARFRQAYL DEFPGFYKTADAGMIDEDGYLYVMARTDDIINVAGHRLSTGAMEEVLAAHPDVAECAVVGIADAMKGQIPLGFVVLNAGV ARGGDVIEKEVVALVRERIGPVAAFKTVVTIKRLPKTRSGKILRGTMQKIADKEAWTMPATIDDPAILDEITAAMKARGI GI
Sequences:
>Translated_642_residues MVPGRLPMASRYHEVYDGWKRDPEKFWADAAGAIDWYSPWDKVFDADAGVYGRWFTGATCNTCYNAIDRHVARGRADQIA LIHDSAITGTVKKFTYAELKREVVALTSVLKNRGIGKGDRVIIYMPMVAEAAIAMLACARIGAVHSVVFGGFASHELATR IDDAKPKLIISASCGLEPGRIVAYKPLLDKAIEMSGHKPDACLILQRDQLRCELKEHFDIDYADAVARERAAGANVDCVP VLATDPLYIIYTSGTTGQPKGIVRDNGGHMVALKWTMENEFGVKPGEVFWAASDVGWVVGHSYIVYGPLLHGSTSVLFEG KPIGTPDAGTYWRVISDHGVVALFTAPTAFRAIKGQDPKGEFVPRYDLSKFRTLFLAGERADPETIKWAEQKLNVPVIDH WWQTETGSPMTINPAGLGLLPVKYGSPGVPMPGYDIRVLDDAGHEVPRGTLGNVVVKLPLPAGCLPTLWNADARFRQAYL DEFPGFYKTADAGMIDEDGYLYVMARTDDIINVAGHRLSTGAMEEVLAAHPDVAECAVVGIADAMKGQIPLGFVVLNAGV ARGGDVIEKEVVALVRERIGPVAAFKTVVTIKRLPKTRSGKILRGTMQKIADKEAWTMPATIDDPAILDEITAAMKARGI GI >Mature_642_residues MVPGRLPMASRYHEVYDGWKRDPEKFWADAAGAIDWYSPWDKVFDADAGVYGRWFTGATCNTCYNAIDRHVARGRADQIA LIHDSAITGTVKKFTYAELKREVVALTSVLKNRGIGKGDRVIIYMPMVAEAAIAMLACARIGAVHSVVFGGFASHELATR IDDAKPKLIISASCGLEPGRIVAYKPLLDKAIEMSGHKPDACLILQRDQLRCELKEHFDIDYADAVARERAAGANVDCVP VLATDPLYIIYTSGTTGQPKGIVRDNGGHMVALKWTMENEFGVKPGEVFWAASDVGWVVGHSYIVYGPLLHGSTSVLFEG KPIGTPDAGTYWRVISDHGVVALFTAPTAFRAIKGQDPKGEFVPRYDLSKFRTLFLAGERADPETIKWAEQKLNVPVIDH WWQTETGSPMTINPAGLGLLPVKYGSPGVPMPGYDIRVLDDAGHEVPRGTLGNVVVKLPLPAGCLPTLWNADARFRQAYL DEFPGFYKTADAGMIDEDGYLYVMARTDDIINVAGHRLSTGAMEEVLAAHPDVAECAVVGIADAMKGQIPLGFVVLNAGV ARGGDVIEKEVVALVRERIGPVAAFKTVVTIKRLPKTRSGKILRGTMQKIADKEAWTMPATIDDPAILDEITAAMKARGI GI
Specific function: Catalyzes The Synthesis Of Propionyl-CoA From Propionate And CoA. Also Converts Acetate To Acetyl-CoA But With A Lower Specific Activity (By Similarity). [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=629, Percent_Identity=50.8744038155803, Blast_Score=680, Evalue=0.0, Organism=Homo sapiens, GI8923896, Length=663, Percent_Identity=36.3499245852187, Blast_Score=388, Evalue=1e-107, Organism=Homo sapiens, GI253970489, Length=676, Percent_Identity=35.6508875739645, Blast_Score=383, Evalue=1e-106, Organism=Homo sapiens, GI28416953, Length=633, Percent_Identity=36.3349131121643, Blast_Score=370, Evalue=1e-102, Organism=Homo sapiens, GI38505220, Length=532, Percent_Identity=27.0676691729323, Blast_Score=184, Evalue=3e-46, Organism=Homo sapiens, GI42544132, Length=525, Percent_Identity=25.5238095238095, Blast_Score=162, Evalue=1e-39, Organism=Homo sapiens, GI115511026, Length=499, Percent_Identity=25.6513026052104, Blast_Score=155, Evalue=9e-38, Organism=Homo sapiens, GI122937307, Length=521, Percent_Identity=25.9117082533589, Blast_Score=152, Evalue=1e-36, Organism=Homo sapiens, GI58082049, Length=532, Percent_Identity=25.3759398496241, Blast_Score=151, Evalue=1e-36, Organism=Homo sapiens, GI157311624, Length=539, Percent_Identity=25.417439703154, Blast_Score=151, Evalue=2e-36, Organism=Homo sapiens, GI157311622, Length=539, Percent_Identity=25.417439703154, Blast_Score=151, Evalue=2e-36, Organism=Homo sapiens, GI31982927, Length=637, Percent_Identity=22.6059654631083, Blast_Score=142, Evalue=7e-34, Organism=Homo sapiens, GI195947378, Length=436, Percent_Identity=22.4770642201835, Blast_Score=94, Evalue=6e-19, Organism=Homo sapiens, GI156151445, Length=593, Percent_Identity=23.1028667790894, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI187761345, Length=395, Percent_Identity=26.0759493670886, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI187761343, Length=395, Percent_Identity=26.0759493670886, Blast_Score=79, Evalue=1e-14, Organism=Escherichia coli, GI1786529, Length=631, Percent_Identity=45.324881141046, Blast_Score=511, Evalue=1e-146, Organism=Escherichia coli, GI1790505, Length=637, Percent_Identity=37.6766091051805, Blast_Score=401, Evalue=1e-113, Organism=Escherichia coli, GI145693145, Length=547, Percent_Identity=23.9488117001828, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI221142682, Length=539, Percent_Identity=22.2634508348794, Blast_Score=102, Evalue=8e-23, Organism=Escherichia coli, GI1786801, Length=550, Percent_Identity=23.4545454545455, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1788107, Length=580, Percent_Identity=23.448275862069, Blast_Score=95, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71983001, Length=649, Percent_Identity=34.0523882896764, Blast_Score=346, Evalue=2e-95, Organism=Caenorhabditis elegans, GI71982997, Length=649, Percent_Identity=34.0523882896764, Blast_Score=346, Evalue=3e-95, Organism=Caenorhabditis elegans, GI17569507, Length=635, Percent_Identity=24.0944881889764, Blast_Score=135, Evalue=6e-32, Organism=Caenorhabditis elegans, GI17557194, Length=553, Percent_Identity=24.4122965641953, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71985884, Length=575, Percent_Identity=23.4782608695652, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17538037, Length=550, Percent_Identity=24.9090909090909, Blast_Score=109, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17559526, Length=555, Percent_Identity=22.7027027027027, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17531443, Length=529, Percent_Identity=22.117202268431, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994703, Length=549, Percent_Identity=22.5865209471767, Blast_Score=93, Evalue=4e-19, Organism=Caenorhabditis elegans, GI71994694, Length=549, Percent_Identity=22.5865209471767, Blast_Score=93, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71994690, Length=549, Percent_Identity=22.5865209471767, Blast_Score=92, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6319264, Length=647, Percent_Identity=35.7032457496136, Blast_Score=393, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6323182, Length=654, Percent_Identity=36.5443425076453, Blast_Score=389, Evalue=1e-108, Organism=Saccharomyces cerevisiae, GI6319699, Length=554, Percent_Identity=22.5631768953069, Blast_Score=97, Evalue=6e-21, Organism=Drosophila melanogaster, GI21355225, Length=638, Percent_Identity=45.141065830721, Blast_Score=596, Evalue=1e-170, Organism=Drosophila melanogaster, GI24667955, Length=653, Percent_Identity=38.1316998468606, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI62472339, Length=563, Percent_Identity=39.6092362344583, Blast_Score=363, Evalue=1e-100, Organism=Drosophila melanogaster, GI24667959, Length=530, Percent_Identity=38.8679245283019, Blast_Score=332, Evalue=5e-91, Organism=Drosophila melanogaster, GI21355181, Length=557, Percent_Identity=23.3393177737882, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI18859661, Length=556, Percent_Identity=23.3812949640288, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI24648260, Length=377, Percent_Identity=25.1989389920424, Blast_Score=87, Evalue=5e-17, Organism=Drosophila melanogaster, GI21356441, Length=545, Percent_Identity=22.2018348623853, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI19922652, Length=551, Percent_Identity=22.8675136116152, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI281365686, Length=498, Percent_Identity=21.8875502008032, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356947, Length=370, Percent_Identity=23.7837837837838, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI24648257, Length=363, Percent_Identity=25.6198347107438, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24653035, Length=376, Percent_Identity=23.1382978723404, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI20130357, Length=372, Percent_Identity=22.3118279569892, Blast_Score=66, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.2.1.17 [C]
Molecular weight: Translated: 69786; Mature: 69786
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00455 AMP_BINDING ; PS00226 IF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVPGRLPMASRYHEVYDGWKRDPEKFWADAAGAIDWYSPWDKVFDADAGVYGRWFTGATC CCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEEECCCHH NTCYNAIDRHVARGRADQIALIHDSAITGTVKKFTYAELKREVVALTSVLKNRGIGKGDR HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE VIIYMPMVAEAAIAMLACARIGAVHSVVFGGFASHELATRIDDAKPKLIISASCGLEPGR EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC IVAYKPLLDKAIEMSGHKPDACLILQRDQLRCELKEHFDIDYADAVARERAAGANVDCVP EEEEHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEE VLATDPLYIIYTSGTTGQPKGIVRDNGGHMVALKWTMENEFGVKPGEVFWAASDVGWVVG EEECCCEEEEEECCCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCCEEEEECCCCHHHC HSYIVYGPLLHGSTSVLFEGKPIGTPDAGTYWRVISDHGVVALFTAPTAFRAIKGQDPKG CCEEEEECEECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHCCCCCCC EFVPRYDLSKFRTLFLAGERADPETIKWAEQKLNVPVIDHWWQTETGSPMTINPAGLGLL CCCCCCCHHHHEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCEEE PVKYGSPGVPMPGYDIRVLDDAGHEVPRGTLGNVVVKLPLPAGCLPTLWNADARFRQAYL EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHCCCHHHHHHHHH DEFPGFYKTADAGMIDEDGYLYVMARTDDIINVAGHRLSTGAMEEVLAAHPDVAECAVVG HHCCCCEEECCCCCCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH IADAMKGQIPLGFVVLNAGVARGGDVIEKEVVALVRERIGPVAAFKTVVTIKRLPKTRSG HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC KILRGTMQKIADKEAWTMPATIDDPAILDEITAAMKARGIGI CHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVPGRLPMASRYHEVYDGWKRDPEKFWADAAGAIDWYSPWDKVFDADAGVYGRWFTGATC CCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEEECCCHH NTCYNAIDRHVARGRADQIALIHDSAITGTVKKFTYAELKREVVALTSVLKNRGIGKGDR HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE VIIYMPMVAEAAIAMLACARIGAVHSVVFGGFASHELATRIDDAKPKLIISASCGLEPGR EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC IVAYKPLLDKAIEMSGHKPDACLILQRDQLRCELKEHFDIDYADAVARERAAGANVDCVP EEEEHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEE VLATDPLYIIYTSGTTGQPKGIVRDNGGHMVALKWTMENEFGVKPGEVFWAASDVGWVVG EEECCCEEEEEECCCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCCEEEEECCCCHHHC HSYIVYGPLLHGSTSVLFEGKPIGTPDAGTYWRVISDHGVVALFTAPTAFRAIKGQDPKG CCEEEEECEECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHCCCCCCC EFVPRYDLSKFRTLFLAGERADPETIKWAEQKLNVPVIDHWWQTETGSPMTINPAGLGLL CCCCCCCHHHHEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCEEE PVKYGSPGVPMPGYDIRVLDDAGHEVPRGTLGNVVVKLPLPAGCLPTLWNADARFRQAYL EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHCCCHHHHHHHHH DEFPGFYKTADAGMIDEDGYLYVMARTDDIINVAGHRLSTGAMEEVLAAHPDVAECAVVG HHCCCCEEECCCCCCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH IADAMKGQIPLGFVVLNAGVARGGDVIEKEVVALVRERIGPVAAFKTVVTIKRLPKTRSG HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC KILRGTMQKIADKEAWTMPATIDDPAILDEITAAMKARGIGI CHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043; 1339433 [H]