Definition Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession NC_002678
Length 7,036,071

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The map label for this gene is 13474291

Identifier: 13474291

GI number: 13474291

Start: 4083479

End: 4084150

Strand: Reverse

Name: 13474291

Synonym: mll5147

Alternate gene names: NA

Gene position: 4084150-4083479 (Counterclockwise)

Preceding gene: 13474292

Following gene: 13474286

Centisome position: 58.05

GC content: 62.2

Gene sequence:

>672_bases
ATGACAGCAATCCTGCCGCACCGAACGCAGACATCCGCGGGACGCGCTTCGCGTGCCCGACAGGCACTGGATGAACATTT
CGACGGATCGATTTCCGAGTTGCGCGAGGCCGCGAAAGGCTGCCGCCGCTGCCCGTTATGGCGCGATGCGACGCAGACGG
TGTTCGGCGAAGGGCCTGACAATGCCAAGGTCATCTTCGTCGGCGAACAGCCGGGCGATCAGGAAGATCTCGCCGGCAAA
CCTTTCGTCGGTCCGGCTGGCAAGGTGTTCGACGCGATCCTCGATGAGGCGGAGGTGGATCGCCTAAAAGTCTACGTCAC
CAACGCGGTCAAGCACTTCAAATTCGAGCCGCGCGGCAAGCGGCGCATCCATTCCAAGCCAAACGCCGGTGAGGTGCAGG
CCTGCCGCTGGTGGCTCGACAGGGAATTCGCACTGATCAAGCCGGAGCTTGCCGTGGCGCTCGGCGCAACGGCGGCTTTG
TCGCTGCTCGGCAAGGCCATACCGGTGACGAAGATGCGCGGCCAGGTGATCGAACGCGAGGATGGCCTGCGCGTGTTCAT
CACCATCCATCCGTCCTTTATCCTGCGTATCCATGAGCCTGTGGACAAGGAGGCCGAGCGCGAGCGTTTCCTGCGGGATA
TGAGAGAGGTGAAACGGTTGATGGTTGCCTGA

Upstream 100 bases:

>100_bases
CACCGTCAGCGAACTGGATTATCATCTCTATTTGCACGAGGTGTGAGGATCGGGAACCATCATCCGCCACGTCCATTTCC
TGTCGAAATGGACGAGACAG

Downstream 100 bases:

>100_bases
ACGGGTCGCCTATCGGATCAGGATCGCCCTGAGATCATTGACATTCGTGCCGGTCGGCCCCGGCACGAACAGATCGCCAA
CCGCATTGAACGCTGTCCAG

Product: hypothetical protein

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase Related Protein; Uracil DNA Glycosylase Superfamily Protein; Phage SPO1 DNA Polymerase-Like Protein; Uracil-DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; DNA Polymerase Bacteriophage-Type; DNA Polymerase; DNA-Directed DNA Polymerase Protein; DNA Polymerase-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Uracil DNA Glycosylase; Phage Spo1 DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; Uracil DNA Glycosylase Protein; Bacteriophage-Type DNA Polymerase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage DNA Polymerase; Phage SPO1 DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase-Like Protein; Transcriptional Regulator Fis Family; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Helicase/Glycosylase; Fis Family Transcriptional Regulator; DNA Polymerase-Like Protein

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPDNAKVIFVGEQPGDQEDLAGK
PFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGKRRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAAL
SLLGKAIPVTKMRGQVIEREDGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA

Sequences:

>Translated_223_residues
MTAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPDNAKVIFVGEQPGDQEDLAGK
PFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGKRRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAAL
SLLGKAIPVTKMRGQVIEREDGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA
>Mature_222_residues
TAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPDNAKVIFVGEQPGDQEDLAGKP
FVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGKRRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAALS
LLGKAIPVTKMRGQVIEREDGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 25046; Mature: 24915

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPD
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC
NAKVIFVGEQPGDQEDLAGKPFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGK
CCEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC
RRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAALSLLGKAIPVTKMRGQVIERE
HHCCCCCCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCHHEECC
DGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA
CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPD
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC
NAKVIFVGEQPGDQEDLAGKPFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGK
CCEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC
RRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAALSLLGKAIPVTKMRGQVIERE
HHCCCCCCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCHHEECC
DGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA
CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA