| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is 13474291
Identifier: 13474291
GI number: 13474291
Start: 4083479
End: 4084150
Strand: Reverse
Name: 13474291
Synonym: mll5147
Alternate gene names: NA
Gene position: 4084150-4083479 (Counterclockwise)
Preceding gene: 13474292
Following gene: 13474286
Centisome position: 58.05
GC content: 62.2
Gene sequence:
>672_bases ATGACAGCAATCCTGCCGCACCGAACGCAGACATCCGCGGGACGCGCTTCGCGTGCCCGACAGGCACTGGATGAACATTT CGACGGATCGATTTCCGAGTTGCGCGAGGCCGCGAAAGGCTGCCGCCGCTGCCCGTTATGGCGCGATGCGACGCAGACGG TGTTCGGCGAAGGGCCTGACAATGCCAAGGTCATCTTCGTCGGCGAACAGCCGGGCGATCAGGAAGATCTCGCCGGCAAA CCTTTCGTCGGTCCGGCTGGCAAGGTGTTCGACGCGATCCTCGATGAGGCGGAGGTGGATCGCCTAAAAGTCTACGTCAC CAACGCGGTCAAGCACTTCAAATTCGAGCCGCGCGGCAAGCGGCGCATCCATTCCAAGCCAAACGCCGGTGAGGTGCAGG CCTGCCGCTGGTGGCTCGACAGGGAATTCGCACTGATCAAGCCGGAGCTTGCCGTGGCGCTCGGCGCAACGGCGGCTTTG TCGCTGCTCGGCAAGGCCATACCGGTGACGAAGATGCGCGGCCAGGTGATCGAACGCGAGGATGGCCTGCGCGTGTTCAT CACCATCCATCCGTCCTTTATCCTGCGTATCCATGAGCCTGTGGACAAGGAGGCCGAGCGCGAGCGTTTCCTGCGGGATA TGAGAGAGGTGAAACGGTTGATGGTTGCCTGA
Upstream 100 bases:
>100_bases CACCGTCAGCGAACTGGATTATCATCTCTATTTGCACGAGGTGTGAGGATCGGGAACCATCATCCGCCACGTCCATTTCC TGTCGAAATGGACGAGACAG
Downstream 100 bases:
>100_bases ACGGGTCGCCTATCGGATCAGGATCGCCCTGAGATCATTGACATTCGTGCCGGTCGGCCCCGGCACGAACAGATCGCCAA CCGCATTGAACGCTGTCCAG
Product: hypothetical protein
Products: diphosphate; DNAn+1
Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase Related Protein; Uracil DNA Glycosylase Superfamily Protein; Phage SPO1 DNA Polymerase-Like Protein; Uracil-DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; DNA Polymerase Bacteriophage-Type; DNA Polymerase; DNA-Directed DNA Polymerase Protein; DNA Polymerase-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Uracil DNA Glycosylase; Phage Spo1 DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; Uracil DNA Glycosylase Protein; Bacteriophage-Type DNA Polymerase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage DNA Polymerase; Phage SPO1 DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase-Like Protein; Transcriptional Regulator Fis Family; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Helicase/Glycosylase; Fis Family Transcriptional Regulator; DNA Polymerase-Like Protein
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MTAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPDNAKVIFVGEQPGDQEDLAGK PFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGKRRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAAL SLLGKAIPVTKMRGQVIEREDGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA
Sequences:
>Translated_223_residues MTAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPDNAKVIFVGEQPGDQEDLAGK PFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGKRRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAAL SLLGKAIPVTKMRGQVIEREDGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA >Mature_222_residues TAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPDNAKVIFVGEQPGDQEDLAGKP FVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGKRRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAALS LLGKAIPVTKMRGQVIEREDGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 25046; Mature: 24915
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPD CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC NAKVIFVGEQPGDQEDLAGKPFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGK CCEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC RRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAALSLLGKAIPVTKMRGQVIERE HHCCCCCCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCHHEECC DGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAILPHRTQTSAGRASRARQALDEHFDGSISELREAAKGCRRCPLWRDATQTVFGEGPD CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC NAKVIFVGEQPGDQEDLAGKPFVGPAGKVFDAILDEAEVDRLKVYVTNAVKHFKFEPRGK CCEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC RRIHSKPNAGEVQACRWWLDREFALIKPELAVALGATAALSLLGKAIPVTKMRGQVIERE HHCCCCCCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCHHEECC DGLRVFITIHPSFILRIHEPVDKEAERERFLRDMREVKRLMVA CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA