Click here to switch to the map view.

The map label for this gene is ygiP [C]

Identifier: 13474286

GI number: 13474286

Start: 4078041

End: 4078961

Strand: Reverse

Name: ygiP [C]

Synonym: mll5139

Alternate gene names: 13474286

Gene position: 4078961-4078041 (Counterclockwise)

Preceding gene: 13474291

Following gene: 13474285

Centisome position: 57.97

GC content: 64.06

Gene sequence:

>921_bases
ATGGCCTATCTCGACAACATCGCCGTCTTCGTCCGCGTCGTCGAACTCGGCAATCTGTCGGCGGCGGGCCGCGACATGCG
CATTTCGCCGGCCGTGGCTTCCAACCGCATCAAGGAACTGGAGAAGCATCTGGGCGTGCGGCTGTTCAACCGCACCACGC
GGCAATTGATGCCGACCGAGCATGGCACGGTTTTCTACTCGGGCGCCAAGCAAGTGCTGGAGGCGATCACCGAAGCGGAA
GCGGCGGTATCAGCACTTTCCGGCCAACCGCGCGGCACGATTCGCGTTACCGCACCCCTAGGCCTTGGCCGGCGGCTGGT
GGCCTCGGGCATTCCCGATTTCCACGACAAATATCCCGATATCGAGGTACGGCTGAGGCTCTCGGACCACAATGTCGACA
TCATGAAGGAAGGCATCGACGTCGCCTTCCGGCTCGGCATCATCGAGGATTCCAGCCTCAGGATGCGCGGCATCATGGAA
TGCGAGCGCGTGCTGGTGGCGGCGCCGAAATATCTGGAGGCGCGCGGCGAACCGGCCGAGCCGCAGGAGCTGATCGGCAA
GAAACACGACTGCCTGATGCTGCGCTATTCCGGCGCGCGCGAATATGTCTGGACGCTGCAGACCCCGACCGGGCCGCAGA
AATTCGAAGTGCACGGACCCTACGACACGGATGATGGCGACGTGCTGACCGGCTGGGCGCTGTCGGGACGCGGCATCATC
AACAAGCCGCGCTTCGAGGTCGAACCGTTCATCCGCGACCGGCGGCTGCAGGTGATCCTGGCCAACACGCCGCCGACGCC
GGTGCAGTTCGCCGCCGTCTATCCGCACAAGAAGCTGCAGGACCCCAAGGTGCGGCTGCTGCTCGACTTCATGGCGGAGC
GCTGCCAGCGGCTGATCAAGGATATCCTGGCCGGCAAGTGA

Upstream 100 bases:

>100_bases
GGTCTCGCACGCAAACGGAAAGAGGCGAGGTGTACGATGACTTTCAAAAAAAAATGGAAAATACTAGGTTGATCGCCGAA
AACCGGCGAAGGTGCTCCGC

Downstream 100 bases:

>100_bases
GCGGCGATTGGCCCAGTGCCAGCGGTTGCCATCCCCAGATGTGGCGAACATAGTCCGGGTTCCATTCCGTCCTGCAGGAA
CCATCGATGGACAACGGCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MAYLDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTVFYSGAKQVLEAITEAE
AAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVRLRLSDHNVDIMKEGIDVAFRLGIIEDSSLRMRGIME
CERVLVAAPKYLEARGEPAEPQELIGKKHDCLMLRYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGII
NKPRFEVEPFIRDRRLQVILANTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQRLIKDILAGK

Sequences:

>Translated_306_residues
MAYLDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTVFYSGAKQVLEAITEAE
AAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVRLRLSDHNVDIMKEGIDVAFRLGIIEDSSLRMRGIME
CERVLVAAPKYLEARGEPAEPQELIGKKHDCLMLRYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGII
NKPRFEVEPFIRDRRLQVILANTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQRLIKDILAGK
>Mature_305_residues
AYLDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTVFYSGAKQVLEAITEAEA
AVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVRLRLSDHNVDIMKEGIDVAFRLGIIEDSSLRMRGIMEC
ERVLVAAPKYLEARGEPAEPQELIGKKHDCLMLRYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGIIN
KPRFEVEPFIRDRRLQVILANTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQRLIKDILAGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.4246575342466, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=29.3918918918919, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=29.1666666666667, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=28.5714285714286, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=28.0405405405405, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=27.1186440677966, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=25.6140350877193, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788481, Length=218, Percent_Identity=29.8165137614679, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789173, Length=237, Percent_Identity=25.7383966244726, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787601, Length=214, Percent_Identity=25.7009345794392, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=175, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788706, Length=170, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790011, Length=283, Percent_Identity=23.321554770318, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=169, Percent_Identity=24.2603550295858, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34262; Mature: 34131

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYLDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTE
CCCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCEEHHHHHHHHHCCCC
HGTVFYSGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPD
CCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCCCHHHCCCC
IEVRLRLSDHNVDIMKEGIDVAFRLGIIEDSSLRMRGIMECERVLVAAPKYLEARGEPAE
EEEEEEECCCCCHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PQELIGKKHDCLMLRYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGII
HHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCC
NKPRFEVEPFIRDRRLQVILANTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQRLIK
CCCCCCCCHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
DILAGK
HHHCCC
>Mature Secondary Structure 
AYLDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTE
CCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCEEHHHHHHHHHCCCC
HGTVFYSGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPD
CCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCCCHHHCCCC
IEVRLRLSDHNVDIMKEGIDVAFRLGIIEDSSLRMRGIMECERVLVAAPKYLEARGEPAE
EEEEEEECCCCCHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PQELIGKKHDCLMLRYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGII
HHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCC
NKPRFEVEPFIRDRRLQVILANTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQRLIK
CCCCCCCCHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
DILAGK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]