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The map label for this gene is ygeR [C]

Identifier: 13471177

GI number: 13471177

Start: 901411

End: 902958

Strand: Reverse

Name: ygeR [C]

Synonym: mll1077

Alternate gene names: 13471177

Gene position: 902958-901411 (Counterclockwise)

Preceding gene: 13471178

Following gene: 13471175

Centisome position: 12.83

GC content: 66.28

Gene sequence:

>1548_bases
ATGCAACTCAGTGTTTTGAAGACAAACAGTCGCAATCTGGCGCGGGGCTGCGCTGTTCTCATGATTGCGGGCGCGGCGGC
CGGGTGCAGTTCCCAGGCTTCGCGGTTCAACAGTGTCGACGACGTCTTCACTTCCTCGACGAACAATCAGCGCGCCATCA
TCAACAAGCAGGATGCCGTGCAGCCCTATCCGGGCGATGTCTCGGCCGCGCCGCTCGACGGCAGCCACACGCAGTCGGTC
AGCCGCTCCAGCCTCGAGCCGGTTTCGAGTCGGCCATTGCCGCCGCCCGCTTCAGCCCAGGCGCAACCCGCGCCGGCGCT
CGCGCCTGCCGCCAATCCGGTGCGTGTCGCCTCGGCGCCGGCCATGGTTCGGCCCGCTCCTCATGTCGACAGGACGACAA
CCGGTACCGTCGAGCCGGCTGCCAAGCCATTCAAGAATGCCCAGCCCGACGCGCCGAAGGTGGCCGATGCGGGCAGGCCG
CACGCGACCGAAATCGTCGTCAGGGACGGCGAGACCATTTCCGGCCTGGCCGCGCATTACAAAGTGCCGGCCGATGTCAT
CATGAAGGTGAACGGCCTGAGCCCGACCAAGGGGCTGAAGACCGGTCAGAAGATCGTCATCCCTGCCTATGCCTATTCGA
GCAAGGCCGAGCCGAAGGTCGCCGACGCCAAGCAGTTGAAGGACGGGCCGGCGAAGGATGGCAAGCACGACCTGCCGGCC
ACCGCGCCGGACAAGGTAGCCGTCCTGCCGCAGCAGCCGAAGCTCAAGGAGGGGAAGTCCGCCGCGCAGGTCGACGCTTC
GGCCGCCGCGAGCCAACCCAAGGAGCCCAAGCCGGCGCAGGTCGCCAAGGCAACCGGCGCCGGCGGCACCTACACGGTCC
AGTCGGGTGACACGATGTCCTCGATCGCCAGGAAGACCGGAGTCGGCGTCGTTGCGCTGAAGCAGGCCAACGGCATGAAG
GATGGCTTGCTCAAGATCGGCCAGACCCTGAAGGTACCGGCGGGTGGAACCGCGACTGTCGCCAGCTCCAAGCCGGCGAA
GGTCGATCCGGTGACCACGGCAACCACGCAGCCTCCGGCAAAGACCACGCCGTCGGAAACGCTTGCATCCTATACGCCGC
CGAAGAAGGACGCGAAGGTCATCCAGCAGGCCGAGGACGACGAAGCGGTGGCGCCCGATGCCACGGGTATCGGCAAGATG
CGCTGGCCGGTACGCGGCCGGGTGATCTCCGGTTTCGGATCCGGCAAGGACGGCGTCGATATCGCCGTGCCCTCGGGCAC
GCCGATCAAGGCGGCCGAGAACGGCGTCGTCATCTACGCCGGCGACGGGCTCAAGGAATTCGGCAATACGGTGCTGGTGC
GCCACGAGAACGGCCTGGTCACCGTCTATGGTCATGCCAGCTCGATCGAGGTGCAGCGCGGCCAGAAGGTCAAGCGCGGC
CAGGAAATCGCATTGTCGGGCATGAGCGGCACGACGGACTCGCCGAAGCTGCACTTCGAAGTGCGCAAGAACTCGGCGCC
GGTCGACCCCTCTGGCTATCTCGAATAG

Upstream 100 bases:

>100_bases
TTAAGAAAATTTTCGTCGGATTCTAATGGGTTAACCGACCAGTAACATTAACGCGCTTTAATCCGATCCAGTTGGTGCAG
AGTTTGTGCGGGTTAGTGCG

Downstream 100 bases:

>100_bases
TCCGGCTATCTCGAATAGAAGAAGAAAGCGATTTTTGCGGGACGTCTGACCTCCAGTCCGGCCCGCCGGCTTGGCCCGCC
CCGCAAGGAGCGGGCTTTTT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MQLSVLKTNSRNLARGCAVLMIAGAAAGCSSQASRFNSVDDVFTSSTNNQRAIINKQDAVQPYPGDVSAAPLDGSHTQSV
SRSSLEPVSSRPLPPPASAQAQPAPALAPAANPVRVASAPAMVRPAPHVDRTTTGTVEPAAKPFKNAQPDAPKVADAGRP
HATEIVVRDGETISGLAAHYKVPADVIMKVNGLSPTKGLKTGQKIVIPAYAYSSKAEPKVADAKQLKDGPAKDGKHDLPA
TAPDKVAVLPQQPKLKEGKSAAQVDASAAASQPKEPKPAQVAKATGAGGTYTVQSGDTMSSIARKTGVGVVALKQANGMK
DGLLKIGQTLKVPAGGTATVASSKPAKVDPVTTATTQPPAKTTPSETLASYTPPKKDAKVIQQAEDDEAVAPDATGIGKM
RWPVRGRVISGFGSGKDGVDIAVPSGTPIKAAENGVVIYAGDGLKEFGNTVLVRHENGLVTVYGHASSIEVQRGQKVKRG
QEIALSGMSGTTDSPKLHFEVRKNSAPVDPSGYLE

Sequences:

>Translated_515_residues
MQLSVLKTNSRNLARGCAVLMIAGAAAGCSSQASRFNSVDDVFTSSTNNQRAIINKQDAVQPYPGDVSAAPLDGSHTQSV
SRSSLEPVSSRPLPPPASAQAQPAPALAPAANPVRVASAPAMVRPAPHVDRTTTGTVEPAAKPFKNAQPDAPKVADAGRP
HATEIVVRDGETISGLAAHYKVPADVIMKVNGLSPTKGLKTGQKIVIPAYAYSSKAEPKVADAKQLKDGPAKDGKHDLPA
TAPDKVAVLPQQPKLKEGKSAAQVDASAAASQPKEPKPAQVAKATGAGGTYTVQSGDTMSSIARKTGVGVVALKQANGMK
DGLLKIGQTLKVPAGGTATVASSKPAKVDPVTTATTQPPAKTTPSETLASYTPPKKDAKVIQQAEDDEAVAPDATGIGKM
RWPVRGRVISGFGSGKDGVDIAVPSGTPIKAAENGVVIYAGDGLKEFGNTVLVRHENGLVTVYGHASSIEVQRGQKVKRG
QEIALSGMSGTTDSPKLHFEVRKNSAPVDPSGYLE
>Mature_515_residues
MQLSVLKTNSRNLARGCAVLMIAGAAAGCSSQASRFNSVDDVFTSSTNNQRAIINKQDAVQPYPGDVSAAPLDGSHTQSV
SRSSLEPVSSRPLPPPASAQAQPAPALAPAANPVRVASAPAMVRPAPHVDRTTTGTVEPAAKPFKNAQPDAPKVADAGRP
HATEIVVRDGETISGLAAHYKVPADVIMKVNGLSPTKGLKTGQKIVIPAYAYSSKAEPKVADAKQLKDGPAKDGKHDLPA
TAPDKVAVLPQQPKLKEGKSAAQVDASAAASQPKEPKPAQVAKATGAGGTYTVQSGDTMSSIARKTGVGVVALKQANGMK
DGLLKIGQTLKVPAGGTATVASSKPAKVDPVTTATTQPPAKTTPSETLASYTPPKKDAKVIQQAEDDEAVAPDATGIGKM
RWPVRGRVISGFGSGKDGVDIAVPSGTPIKAAENGVVIYAGDGLKEFGNTVLVRHENGLVTVYGHASSIEVQRGQKVKRG
QEIALSGMSGTTDSPKLHFEVRKNSAPVDPSGYLE

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=237, Percent_Identity=33.7552742616034, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789099, Length=266, Percent_Identity=30.8270676691729, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87082297, Length=123, Percent_Identity=37.3983739837398, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081989, Length=150, Percent_Identity=37.3333333333333, Blast_Score=76, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 52902; Mature: 52902

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSVLKTNSRNLARGCAVLMIAGAAAGCSSQASRFNSVDDVFTSSTNNQRAIINKQDAV
CEEEEEECCCCCHHHHEEEEEEECCCCCCCHHHHHCCCHHHHHHCCCCCCEEEECCCCCC
QPYPGDVSAAPLDGSHTQSVSRSSLEPVSSRPLPPPASAQAQPAPALAPAANPVRVASAP
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
AMVRPAPHVDRTTTGTVEPAAKPFKNAQPDAPKVADAGRPHATEIVVRDGETISGLAAHY
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHC
KVPADVIMKVNGLSPTKGLKTGQKIVIPAYAYSSKAEPKVADAKQLKDGPAKDGKHDLPA
CCCHHHEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCC
TAPDKVAVLPQQPKLKEGKSAAQVDASAAASQPKEPKPAQVAKATGAGGTYTVQSGDTMS
CCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECCCHHH
SIARKTGVGVVALKQANGMKDGLLKIGQTLKVPAGGTATVASSKPAKVDPVTTATTQPPA
HHHHHHCCCEEEEECCCCCHHHHHHCCCEEECCCCCCEEECCCCCCCCCCCEECCCCCCC
KTTPSETLASYTPPKKDAKVIQQAEDDEAVAPDATGIGKMRWPVRGRVISGFGSGKDGVD
CCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCEE
IAVPSGTPIKAAENGVVIYAGDGLKEFGNTVLVRHENGLVTVYGHASSIEVQRGQKVKRG
EEECCCCCCEECCCCEEEEECCCHHHHCCEEEEEECCCEEEEEECCCEEEHHCCCHHHCC
QEIALSGMSGTTDSPKLHFEVRKNSAPVDPSGYLE
CEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MQLSVLKTNSRNLARGCAVLMIAGAAAGCSSQASRFNSVDDVFTSSTNNQRAIINKQDAV
CEEEEEECCCCCHHHHEEEEEEECCCCCCCHHHHHCCCHHHHHHCCCCCCEEEECCCCCC
QPYPGDVSAAPLDGSHTQSVSRSSLEPVSSRPLPPPASAQAQPAPALAPAANPVRVASAP
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
AMVRPAPHVDRTTTGTVEPAAKPFKNAQPDAPKVADAGRPHATEIVVRDGETISGLAAHY
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHC
KVPADVIMKVNGLSPTKGLKTGQKIVIPAYAYSSKAEPKVADAKQLKDGPAKDGKHDLPA
CCCHHHEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCC
TAPDKVAVLPQQPKLKEGKSAAQVDASAAASQPKEPKPAQVAKATGAGGTYTVQSGDTMS
CCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECCCHHH
SIARKTGVGVVALKQANGMKDGLLKIGQTLKVPAGGTATVASSKPAKVDPVTTATTQPPA
HHHHHHCCCEEEEECCCCCHHHHHHCCCEEECCCCCCEEECCCCCCCCCCCEECCCCCCC
KTTPSETLASYTPPKKDAKVIQQAEDDEAVAPDATGIGKMRWPVRGRVISGFGSGKDGVD
CCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCEE
IAVPSGTPIKAAENGVVIYAGDGLKEFGNTVLVRHENGLVTVYGHASSIEVQRGQKVKRG
EEECCCCCCEECCCCEEEEECCCHHHHCCEEEEEECCCEEEEEECCCEEEHHCCCHHHCC
QEIALSGMSGTTDSPKLHFEVRKNSAPVDPSGYLE
CEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]