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The map label for this gene is rhaR [C]

Identifier: 13471175

GI number: 13471175

Start: 899456

End: 900295

Strand: Reverse

Name: rhaR [C]

Synonym: mll1074

Alternate gene names: 13471175

Gene position: 900295-899456 (Counterclockwise)

Preceding gene: 13471177

Following gene: 13471173

Centisome position: 12.8

GC content: 65.83

Gene sequence:

>840_bases
ATGAATCGAGAGAGCATGCGTCCACAATTCGCTCCGGCCCGATCCCCATCCGACGTCGCAATGATCTCCCGGCACATTGA
GGCAGGCGTGCATCGTCTGCCGCGGGCGCCGCACCATCGCGTCATGGTGCATGCAAGCGCGGCGACACGCTCCTACTGCA
ATCAGGTTGGGCGCTATTTCGTCAGGCGCGCCGGCGATATCGACCTGGTGCCGGCTGGCGAGGAGGGTGGCTTCGAGGCT
GAAACCGCGTTCGACACGGTCGAGATCGTCTTGCCGCCGGCCCTGATGGAGAGGGTGGCGGCGGAACTTGGCGGCAGGGC
GCTGGTATCGCGGCTCGACACGCGCCATCTGCTTCGTGACCAGCGCATCGAACATCTCGCTCGCGCGCTCCAGAACGATC
TCGATGCAGGCGCACCGAGCGGCTCCCTGTTTGCCGACAGCATTGGCGCCGCGCTGGCGGTCAGGCTGCTTGGTGTCGAC
GACGATATAGACATCGAACGGACGAACCGCTTGTCGGATACCCAGCTCAAGCGCGTCCTGGAGCACATCGAGGCCGCTCT
CCACGAGCCGCTTTCGATCGATCGACTGGCCCGGGTTGCCGGGGCGAGCAGCTCGCATCTGCGGACATGGTTCAAGGTGG
CGACGGGCGTCACCCTGCATCGCTACGTGCTGCGACGCCGCGTCGAACGCGCGCGCCTTCTGCTGGAGCGAGGCGATCTC
AGCACAAGCGAGGTCGCGGAACTGACCGGCTTTGCGCACCAGTCACATCTGGCGCATTGGATGCGCCGCGAGATTGGCCA
AACGCCGCGCGACGTACGACGGGCGCGGCCGCCCAAGTGA

Upstream 100 bases:

>100_bases
TCATGGCAACCTCTCTTCCAAGTTTGATGGAGAGGCGTGCGTACAGTTTCGCTGCATTGAAAATCGCGCGGGAATTGCCA
AATCTTGAACAGGTTTCGCC

Downstream 100 bases:

>100_bases
CATCCTGAAGTTTGCTTTGGCGGTGGCTCAATCCTTGAGCGGCTTGCCAAGCCGCCCGGCCAGATCCTGCGTGAACTGCC
AGGCGACGCGGCCCGAGCGG

Product: transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MNRESMRPQFAPARSPSDVAMISRHIEAGVHRLPRAPHHRVMVHASAATRSYCNQVGRYFVRRAGDIDLVPAGEEGGFEA
ETAFDTVEIVLPPALMERVAAELGGRALVSRLDTRHLLRDQRIEHLARALQNDLDAGAPSGSLFADSIGAALAVRLLGVD
DDIDIERTNRLSDTQLKRVLEHIEAALHEPLSIDRLARVAGASSSHLRTWFKVATGVTLHRYVLRRRVERARLLLERGDL
STSEVAELTGFAHQSHLAHWMRREIGQTPRDVRRARPPK

Sequences:

>Translated_279_residues
MNRESMRPQFAPARSPSDVAMISRHIEAGVHRLPRAPHHRVMVHASAATRSYCNQVGRYFVRRAGDIDLVPAGEEGGFEA
ETAFDTVEIVLPPALMERVAAELGGRALVSRLDTRHLLRDQRIEHLARALQNDLDAGAPSGSLFADSIGAALAVRLLGVD
DDIDIERTNRLSDTQLKRVLEHIEAALHEPLSIDRLARVAGASSSHLRTWFKVATGVTLHRYVLRRRVERARLLLERGDL
STSEVAELTGFAHQSHLAHWMRREIGQTPRDVRRARPPK
>Mature_279_residues
MNRESMRPQFAPARSPSDVAMISRHIEAGVHRLPRAPHHRVMVHASAATRSYCNQVGRYFVRRAGDIDLVPAGEEGGFEA
ETAFDTVEIVLPPALMERVAAELGGRALVSRLDTRHLLRDQRIEHLARALQNDLDAGAPSGSLFADSIGAALAVRLLGVD
DDIDIERTNRLSDTQLKRVLEHIEAALHEPLSIDRLARVAGASSSHLRTWFKVATGVTLHRYVLRRRVERARLLLERGDL
STSEVAELTGFAHQSHLAHWMRREIGQTPRDVRRARPPK

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31139; Mature: 31139

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRESMRPQFAPARSPSDVAMISRHIEAGVHRLPRAPHHRVMVHASAATRSYCNQVGRYF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHH
VRRAGDIDLVPAGEEGGFEAETAFDTVEIVLPPALMERVAAELGGRALVSRLDTRHLLRD
HHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
QRIEHLARALQNDLDAGAPSGSLFADSIGAALAVRLLGVDDDIDIERTNRLSDTQLKRVL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHH
EHIEAALHEPLSIDRLARVAGASSSHLRTWFKVATGVTLHRYVLRRRVERARLLLERGDL
HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STSEVAELTGFAHQSHLAHWMRREIGQTPRDVRRARPPK
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MNRESMRPQFAPARSPSDVAMISRHIEAGVHRLPRAPHHRVMVHASAATRSYCNQVGRYF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHH
VRRAGDIDLVPAGEEGGFEAETAFDTVEIVLPPALMERVAAELGGRALVSRLDTRHLLRD
HHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
QRIEHLARALQNDLDAGAPSGSLFADSIGAALAVRLLGVDDDIDIERTNRLSDTQLKRVL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHH
EHIEAALHEPLSIDRLARVAGASSSHLRTWFKVATGVTLHRYVLRRRVERARLLLERGDL
HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STSEVAELTGFAHQSHLAHWMRREIGQTPRDVRRARPPK
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA