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The map label for this gene is rbsB [H]

Identifier: 13471126

GI number: 13471126

Start: 837040

End: 837987

Strand: Reverse

Name: rbsB [H]

Synonym: mll1012

Alternate gene names: 13471126

Gene position: 837987-837040 (Counterclockwise)

Preceding gene: 13471127

Following gene: 13471125

Centisome position: 11.91

GC content: 60.02

Gene sequence:

>948_bases
ATGACCAGTCGCAGACATTTCCTACGCACCACGGCACTTGCCGCCACCCTGGTACTCGGCGCCATGATGCCGGGCGCGGT
CCTGGCTCAGGACAAGATCAAGATCGGCTTCAGCCAAGGCACCATGAACCATCCTTGGCGCGTCGCCATGGTGGAGGGCA
ACAAGAAGTACGCCGCCGAGCATTATCCGGATGTCGATCTCATCGTCACTGACGGCAACAACGATGCTTCCAAGCAGGTG
GCAGACGTCGAAAGCCTGATCGCACAAGGCATCAAGGTGCTGATGATCTCGCCGCTGACCGAGCAGGCACTGACCCCGGT
CGTGAAGGAAGCAATGGATGCCGGGATCAAGGTTGTGACTCTCGACCGCAAGGTCAACACGCCTGTGACCGTTCATGTCG
GCGGCGAGAACCTGCCGCTCGGCGTTGGCGCGGGCGAATTCCTTGCGAAGAAATTGAATGGCAAAGGCAACATCATCGAG
TTGCAAGGGACGGCGGGGGCATCGGCCACCATCGATCGCAACAAGGGGTTTGCAGAAGCGATCGCAAAGCACCCGGACAT
GAAGGTGGTAGCATCGCAGAACTGTGACTACACCCGCGACAAGGCGGTGAAGTTCATGGAAGACATGGTGCAGCGGTTTG
GTCCCGGCCAGATCCAGGCGGTGTACGCGCACAATGACGAGATGGCACTCGGCGCGATCCAGGTGCTGGAGGCCGCCGGC
CGGCTCAATGAAGTGGCGGTGGTCGGTATCGACGGCCAGGAGACTGCTTTCGAGGCAGTCAAACAGGGCAAGCTCGCCGC
AACCTTCGTTTATCCGTTCGTGGCGCCGGAAGGGATCGAGACCGCTTACAAGGTGGCCAAGGGTGAAGAGGTCCCGGAGA
CGATCACCTTGCCGACGGTCTCAGTGACCCCGGACAATATCGCCGACATGATCGGCAAGGGCTTCTAA

Upstream 100 bases:

>100_bases
ACAAAAGACGGTCCTGACATCCATGTGCGGCAGCACTTGCCAGAAGGGCCGGCCGTCGCGCTTTGGAGCCTGAAATGAAA
AACAATGGAGGAGTGAAAAA

Downstream 100 bases:

>100_bases
GTCCTCCCTGGGCAACGGGACGCCGCACTGGCGCGGCGTCCCGAAATTTCAAATAGGAACTGAATGATGAGCGACAAGAA
ACCGTTTGCTGCCCATGGCG

Product: periplasmic ribose-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQV
ADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTPVTVHVGGENLPLGVGAGEFLAKKLNGKGNIIE
LQGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAG
RLNEVAVVGIDGQETAFEAVKQGKLAATFVYPFVAPEGIETAYKVAKGEEVPETITLPTVSVTPDNIADMIGKGF

Sequences:

>Translated_315_residues
MTSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQV
ADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTPVTVHVGGENLPLGVGAGEFLAKKLNGKGNIIE
LQGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAG
RLNEVAVVGIDGQETAFEAVKQGKLAATFVYPFVAPEGIETAYKVAKGEEVPETITLPTVSVTPDNIADMIGKGF
>Mature_314_residues
TSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQVA
DVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTPVTVHVGGENLPLGVGAGEFLAKKLNGKGNIIEL
QGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGR
LNEVAVVGIDGQETAFEAVKQGKLAATFVYPFVAPEGIETAYKVAKGEEVPETITLPTVSVTPDNIADMIGKGF

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=286, Percent_Identity=38.4615384615385, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1790674, Length=274, Percent_Identity=36.1313868613139, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1790526, Length=237, Percent_Identity=31.2236286919831, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789990, Length=274, Percent_Identity=29.9270072992701, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788473, Length=351, Percent_Identity=24.5014245014245, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33530; Mature: 33399

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAE
CCCCHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCEEEEEEECCCEEHHH
HYPDVDLIVTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVT
CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEE
LDRKVNTPVTVHVGGENLPLGVGAGEFLAKKLNGKGNIIELQGTAGASATIDRNKGFAEA
ECCCCCCCEEEEECCCCCCEECCHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCHHHH
IAKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAG
HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHC
RLNEVAVVGIDGQETAFEAVKQGKLAATFVYPFVAPEGIETAYKVAKGEEVPETITLPTV
CCCCEEEEEECCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEECCEE
SVTPDNIADMIGKGF
EECCHHHHHHHCCCC
>Mature Secondary Structure 
TSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAE
CCCHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCEEEEEEECCCEEHHH
HYPDVDLIVTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVT
CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEE
LDRKVNTPVTVHVGGENLPLGVGAGEFLAKKLNGKGNIIELQGTAGASATIDRNKGFAEA
ECCCCCCCEEEEECCCCCCEECCHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCHHHH
IAKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAG
HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHC
RLNEVAVVGIDGQETAFEAVKQGKLAATFVYPFVAPEGIETAYKVAKGEEVPETITLPTV
CCCCEEEEEECCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEECCEE
SVTPDNIADMIGKGF
EECCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]