Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 13471127

GI number: 13471127

Start: 838071

End: 839066

Strand: Reverse

Name: rbsC [H]

Synonym: mll1013

Alternate gene names: 13471127

Gene position: 839066-838071 (Counterclockwise)

Preceding gene: 13471128

Following gene: 13471126

Centisome position: 11.93

GC content: 60.64

Gene sequence:

>996_bases
ATGGCTGAGATGACAACGGGACAAGGATTGGCGTCGATCCGGCCGGGGTCGGTGGGTCGGTTGCGAGGCTGGGCGCAAAG
CCTTGGCCTGCTCTGGGTCCTGATAGTGTTGTGCGCCTTCGCAGTGTATCTGTCGCCGAGCTTCATCCAGACCGGCAACA
TGTTGAATGTCGGCCGCCAGGTCGCGCTGTTTGGCATCGTCAGCGTCGGCATGACCTTCGTGATTCTGACACGCGGCATC
GATCTTTCCGTCGGTTCCATCGTCGGTGTCGTCGCGGTTGCCACAGCGCTGATGCTCTCATCTGGCGTTCCAATCCCGTT
GGCGATGATTGCGGCGCTGGGGATGGGAGCCGTGTTCGGCGCCATCAACGGAGCAGGCGTCGTTTTCTTTGGCATGCCGC
CCTTCATCATGACCCTCGGCACGCTGGTGATGGGGCGCGGCATTGCCATGACCATCGCCAACGGCGAGCCGAAGACGCTT
GGCGATGCCTCGGATGCCTTCTCCTATCTGGGAAGCGGTTTTCTCTTCGGCATTCCCGTACCGATCTGGATCTTCGTTGC
CATAGCCGCCGTGGCTTTCGTTGTCCTACGACACACGCCTTTCGGTCGCCAAATCTACGCGGTCGGTTCAAACACCGAGG
CGGCGCGGCTTGCCGGCATCAACGTGCCGCGCGTGCTGATGTCGGTCTATGCCATCTCGGGCGTGCTGTCGGCGCTGACC
GCCCTGGTTTTTGTCTCACGGCTCACCGTTGGTGAGCCCACCGCTGGCACCAATCTCGAACTCGAGGCCATCTCGATCGT
CGTCATCGGCGGCACCAGCCTGTTTGGCGGCGAAGGCGGCGTCATCGGCACCGTGATCGGCGCCGCAATCATTGCCGTCA
TGGCTAATATATTGAATTTGCTAGGTATATCGCCATTCACACAGCAGATCGTGAAGGGCGCCATCATCATCGCCGCGGTG
ATGTTCGAGGTCTACCGTCACAAAAGACGGTCCTGA

Upstream 100 bases:

>100_bases
GTTGGACCGTCCTGCGACGAGGGCGGGCTGGCCGATGCGGTGGCCTGGCTGCTGCAACGGCAATCGACCCTCGCAATGGC
GCACGAATCGGGAGGAAGGA

Downstream 100 bases:

>100_bases
CATCCATGTGCGGCAGCACTTGCCAGAAGGGCCGGCCGTCGCGCTTTGGAGCCTGAAATGAAAAACAATGGAGGAGTGAA
AAAATGACCAGTCGCAGACA

Product: permease protein of sugar ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MAEMTTGQGLASIRPGSVGRLRGWAQSLGLLWVLIVLCAFAVYLSPSFIQTGNMLNVGRQVALFGIVSVGMTFVILTRGI
DLSVGSIVGVVAVATALMLSSGVPIPLAMIAALGMGAVFGAINGAGVVFFGMPPFIMTLGTLVMGRGIAMTIANGEPKTL
GDASDAFSYLGSGFLFGIPVPIWIFVAIAAVAFVVLRHTPFGRQIYAVGSNTEAARLAGINVPRVLMSVYAISGVLSALT
ALVFVSRLTVGEPTAGTNLELEAISIVVIGGTSLFGGEGGVIGTVIGAAIIAVMANILNLLGISPFTQQIVKGAIIIAAV
MFEVYRHKRRS

Sequences:

>Translated_331_residues
MAEMTTGQGLASIRPGSVGRLRGWAQSLGLLWVLIVLCAFAVYLSPSFIQTGNMLNVGRQVALFGIVSVGMTFVILTRGI
DLSVGSIVGVVAVATALMLSSGVPIPLAMIAALGMGAVFGAINGAGVVFFGMPPFIMTLGTLVMGRGIAMTIANGEPKTL
GDASDAFSYLGSGFLFGIPVPIWIFVAIAAVAFVVLRHTPFGRQIYAVGSNTEAARLAGINVPRVLMSVYAISGVLSALT
ALVFVSRLTVGEPTAGTNLELEAISIVVIGGTSLFGGEGGVIGTVIGAAIIAVMANILNLLGISPFTQQIVKGAIIIAAV
MFEVYRHKRRS
>Mature_330_residues
AEMTTGQGLASIRPGSVGRLRGWAQSLGLLWVLIVLCAFAVYLSPSFIQTGNMLNVGRQVALFGIVSVGMTFVILTRGID
LSVGSIVGVVAVATALMLSSGVPIPLAMIAALGMGAVFGAINGAGVVFFGMPPFIMTLGTLVMGRGIAMTIANGEPKTLG
DASDAFSYLGSGFLFGIPVPIWIFVAIAAVAFVVLRHTPFGRQIYAVGSNTEAARLAGINVPRVLMSVYAISGVLSALTA
LVFVSRLTVGEPTAGTNLELEAISIVVIGGTSLFGGEGGVIGTVIGAAIIAVMANILNLLGISPFTQQIVKGAIIIAAVM
FEVYRHKRRS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=41.2337662337662, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=37.9084967320261, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI145693152, Length=326, Percent_Identity=36.5030674846626, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=36.7549668874172, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=50.7462686567164, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI145693214, Length=274, Percent_Identity=35.4014598540146, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787793, Length=295, Percent_Identity=32.8813559322034, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787794, Length=317, Percent_Identity=31.2302839116719, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788471, Length=322, Percent_Identity=35.4037267080745, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=32.996632996633, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34058; Mature: 33927

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEMTTGQGLASIRPGSVGRLRGWAQSLGLLWVLIVLCAFAVYLSPSFIQTGNMLNVGRQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH
VALFGIVSVGMTFVILTRGIDLSVGSIVGVVAVATALMLSSGVPIPLAMIAALGMGAVFG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AINGAGVVFFGMPPFIMTLGTLVMGRGIAMTIANGEPKTLGDASDAFSYLGSGFLFGIPV
CCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCH
PIWIFVAIAAVAFVVLRHTPFGRQIYAVGSNTEAARLAGINVPRVLMSVYAISGVLSALT
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
ALVFVSRLTVGEPTAGTNLELEAISIVVIGGTSLFGGEGGVIGTVIGAAIIAVMANILNL
HHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHH
LGISPFTQQIVKGAIIIAAVMFEVYRHKRRS
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEMTTGQGLASIRPGSVGRLRGWAQSLGLLWVLIVLCAFAVYLSPSFIQTGNMLNVGRQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH
VALFGIVSVGMTFVILTRGIDLSVGSIVGVVAVATALMLSSGVPIPLAMIAALGMGAVFG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AINGAGVVFFGMPPFIMTLGTLVMGRGIAMTIANGEPKTLGDASDAFSYLGSGFLFGIPV
CCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCH
PIWIFVAIAAVAFVVLRHTPFGRQIYAVGSNTEAARLAGINVPRVLMSVYAISGVLSALT
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
ALVFVSRLTVGEPTAGTNLELEAISIVVIGGTSLFGGEGGVIGTVIGAAIIAVMANILNL
HHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHH
LGISPFTQQIVKGAIIIAAVMFEVYRHKRRS
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]