Click here to switch to the map view.

The map label for this gene is dapA [H]

Identifier: 13471125

GI number: 13471125

Start: 836011

End: 836976

Strand: Reverse

Name: dapA [H]

Synonym: mll1010

Alternate gene names: 13471125

Gene position: 836976-836011 (Counterclockwise)

Preceding gene: 13471126

Following gene: 13471124

Centisome position: 11.9

GC content: 59.73

Gene sequence:

>966_bases
ATGATGAGCGACAAGAAACCGTTTGCTGCCCATGGCGTCATTCCCGCCTGCCTGATGCCGTTCACCGCCGATCTGGCTGT
CGATGAGAGTGCCTACCGCAAGCACCTCGCTGACGTCTCCTCGGTCGAAGGCATTTCCGGCATCACGATCAATGGTCATG
CGGCCGAAGTGCACGCGCTCACCATCGACGAGCAATACCGCGCGATAGTGGTAGCCAAGGATGTGTTGCAGGATCAGGTT
CCGACCATTGTCGGTGTCTACACAAACTCCAGCCTCGAGGCAGCGCGCATCGCCGCCTATGCTGAGCAAGAGGGGGCGGA
CGCGCTGCTGGTTTTCCCGCCGGACTTCATGACGCTCGGTGGGCACCTGCGGCCAGAGATGATCGTCGAGCATCTGAAGC
GCATTACCGATGCGTCCAACCTTCCCATCATCCTGTTCCAGTATCCGCTGGCATCGAACCTTGCTTACCCGCTTCAGACA
TTGCTCGACCTCTGCCGTCGTTTTCCCTCGATCGTCGCGATTAAAGACCAGTGCGGCGATGGCAATTTGCATGAACGTCA
GATCCGCGAATTGAAAGCTCTCGACCGACCGGTCAACACCCTCACCACCCACAGCGCCTGGTTGCTCGGCTCGCTGACGC
TTGGCTGCGACGGGCTCCTGTCGGGTGCCGGCAGCGTCATCGCCAGCCTTCAGGTCGCGCTGTACCGTGCCGTGCAGGCA
AACAATCTCAAGACTGCCAAGGCAATCAATGACCGCATCTATCCGACGGTACGGGCCTTTTATGACGCGCCGCTTCTCGA
TATGCACAATCGCATGAAAGAGGCGCTGGTGCTGCTCGGGCGACTGGACGAAGCTCACGTCCGGCCCCCATTGATGAAGC
CAGACCCCGCCGAGATCGAGAAGATTCGGGGACTGCTGAATGCTGCCGGATTGAGCGCGGAGACGCTTTACAGGAAGGTC
GCCTAG

Upstream 100 bases:

>100_bases
GGACAATATCGCCGACATGATCGGCAAGGGCTTCTAAGTCCTCCCTGGGCAACGGGACGCCGCACTGGCGCGGCGTCCCG
AAATTTCAAATAGGAACTGA

Downstream 100 bases:

>100_bases
TCGATGATGGACCGCCTCGTTCAGGCAGTGGAACCGGCGCCCGGCATCCGACTGCTGACGCTCAACCGGCCGGACAAGCT
GAACGCGTTGTCCAAGGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MMSDKKPFAAHGVIPACLMPFTADLAVDESAYRKHLADVSSVEGISGITINGHAAEVHALTIDEQYRAIVVAKDVLQDQV
PTIVGVYTNSSLEAARIAAYAEQEGADALLVFPPDFMTLGGHLRPEMIVEHLKRITDASNLPIILFQYPLASNLAYPLQT
LLDLCRRFPSIVAIKDQCGDGNLHERQIRELKALDRPVNTLTTHSAWLLGSLTLGCDGLLSGAGSVIASLQVALYRAVQA
NNLKTAKAINDRIYPTVRAFYDAPLLDMHNRMKEALVLLGRLDEAHVRPPLMKPDPAEIEKIRGLLNAAGLSAETLYRKV
A

Sequences:

>Translated_321_residues
MMSDKKPFAAHGVIPACLMPFTADLAVDESAYRKHLADVSSVEGISGITINGHAAEVHALTIDEQYRAIVVAKDVLQDQV
PTIVGVYTNSSLEAARIAAYAEQEGADALLVFPPDFMTLGGHLRPEMIVEHLKRITDASNLPIILFQYPLASNLAYPLQT
LLDLCRRFPSIVAIKDQCGDGNLHERQIRELKALDRPVNTLTTHSAWLLGSLTLGCDGLLSGAGSVIASLQVALYRAVQA
NNLKTAKAINDRIYPTVRAFYDAPLLDMHNRMKEALVLLGRLDEAHVRPPLMKPDPAEIEKIRGLLNAAGLSAETLYRKV
A
>Mature_321_residues
MMSDKKPFAAHGVIPACLMPFTADLAVDESAYRKHLADVSSVEGISGITINGHAAEVHALTIDEQYRAIVVAKDVLQDQV
PTIVGVYTNSSLEAARIAAYAEQEGADALLVFPPDFMTLGGHLRPEMIVEHLKRITDASNLPIILFQYPLASNLAYPLQT
LLDLCRRFPSIVAIKDQCGDGNLHERQIRELKALDRPVNTLTTHSAWLLGSLTLGCDGLLSGAGSVIASLQVALYRAVQA
NNLKTAKAINDRIYPTVRAFYDAPLLDMHNRMKEALVLLGRLDEAHVRPPLMKPDPAEIEKIRGLLNAAGLSAETLYRKV
A

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=295, Percent_Identity=23.3898305084746, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87082415, Length=302, Percent_Identity=23.841059602649, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786463, Length=281, Percent_Identity=24.9110320284698, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788823, Length=312, Percent_Identity=25, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789620, Length=244, Percent_Identity=21.3114754098361, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 34991; Mature: 34991

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSDKKPFAAHGVIPACLMPFTADLAVDESAYRKHLADVSSVEGISGITINGHAAEVHAL
CCCCCCCCHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEE
TIDEQYRAIVVAKDVLQDQVPTIVGVYTNSSLEAARIAAYAEQEGADALLVFPPDFMTLG
EECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHCC
GHLRPEMIVEHLKRITDASNLPIILFQYPLASNLAYPLQTLLDLCRRFPSIVAIKDQCGD
CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
GNLHERQIRELKALDRPVNTLTTHSAWLLGSLTLGCDGLLSGAGSVIASLQVALYRAVQA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
NNLKTAKAINDRIYPTVRAFYDAPLLDMHNRMKEALVLLGRLDEAHVRPPLMKPDPAEIE
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHH
KIRGLLNAAGLSAETLYRKVA
HHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MMSDKKPFAAHGVIPACLMPFTADLAVDESAYRKHLADVSSVEGISGITINGHAAEVHAL
CCCCCCCCHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEE
TIDEQYRAIVVAKDVLQDQVPTIVGVYTNSSLEAARIAAYAEQEGADALLVFPPDFMTLG
EECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHCC
GHLRPEMIVEHLKRITDASNLPIILFQYPLASNLAYPLQTLLDLCRRFPSIVAIKDQCGD
CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
GNLHERQIRELKALDRPVNTLTTHSAWLLGSLTLGCDGLLSGAGSVIASLQVALYRAVQA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
NNLKTAKAINDRIYPTVRAFYDAPLLDMHNRMKEALVLLGRLDEAHVRPPLMKPDPAEIE
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHH
KIRGLLNAAGLSAETLYRKVA
HHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA