Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is pdtaR [H]
Identifier: 126447845
GI number: 126447845
Start: 1220432
End: 1221028
Strand: Direct
Name: pdtaR [H]
Synonym: BMA10247_A1255
Alternate gene names: 126447845
Gene position: 1220432-1221028 (Clockwise)
Preceding gene: 126447693
Following gene: 126447320
Centisome position: 51.87
GC content: 70.85
Gene sequence:
>597_bases ATGGGAACGACCGACCAACCCTCCAAGCTGCGCGTGCTGCTCGTCACCGACACCGACAAGCCGATCGGCGAGCTGCGCGA CACGCTCGCGCGCCTCGGCTACGAGATGCTCGACGAGGTCGCGACGCCCGCGCGGCTGCCCGCGGCCGTCGAGGAGCAGC GCCCGGACGTCGTGATCATCGACACCGAATCGCCGTCGCGCGACACGCTCGAGCAGCTCGCGGTGATGAACGCGACCGCG CCGCGCCCCGTGCTGATGTTCAGCCACGACGCCGACCAGCAGTTGATCCGCGCGGCGGTCGGCGCGGGCGTGAGCGCGTA TCTGATCGAGGGGCTGTCCGCCGAGCGGCTCGCGCCGATCCTCGAAGTCGCGCTCGCGCGCTTCTCGCACGACGAGCAGT TGCGCCAGCGGCTCGCCGAAGTCGAGAGCGAGCTCGCCGAGCGCAAGCTGATCGACCGCGCGAAGCGCATGCTGATGGAC CGCCGCAAGCTGTCCGAACAGGACGCGTACGCGACGCTGCGCCGCAGCGCGATGGATCAGGGCATCCGGATCGTCGAGGC GGCCCGCCGGCTGCTCGCGGCGCACTCGCAATCTTGA
Upstream 100 bases:
>100_bases CGGCGCGAGCCGGCGCGGCGCACCGCGCCCGCGCGCGTATGGTAGAAACAAAGGCATGGGCGAGCGCCGCCGCGACGCGC CCGCCTCTTCCGTCTGACAC
Downstream 100 bases:
>100_bases ACGAAGGTGCAAAACGCATGAACACAGCGCGCATCAAAGCAGCGGCCGCCGATATGCCGGAACGCGCCCGCCTGCGCATC GGCTTCGTCGCGCTGAGCGA
Product: response regulator/ANTAR domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MGTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVIIDTESPSRDTLEQLAVMNATA PRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPILEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMD RRKLSEQDAYATLRRSAMDQGIRIVEAARRLLAAHSQS
Sequences:
>Translated_198_residues MGTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVIIDTESPSRDTLEQLAVMNATA PRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPILEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMD RRKLSEQDAYATLRRSAMDQGIRIVEAARRLLAAHSQS >Mature_197_residues GTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVIIDTESPSRDTLEQLAVMNATAP RPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPILEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMDR RKLSEQDAYATLRRSAMDQGIRIVEAARRLLAAHSQS
Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]
COG id: COG3707
COG function: function code T; Response regulator with putative antiterminator output domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005561 - InterPro: IPR011006 - InterPro: IPR008327 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 22024; Mature: 21892
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVII CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCCEEEE DTESPSRDTLEQLAVMNATAPRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPI ECCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH LEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMDRRKLSEQDAYATLRRSAMDQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIRIVEAARRLLAAHSQS HHHHHHHHHHHHHHHCCC >Mature Secondary Structure GTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVII CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCCEEEE DTESPSRDTLEQLAVMNATAPRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPI ECCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH LEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMDRRKLSEQDAYATLRRSAMDQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIRIVEAARRLLAAHSQS HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]