Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is yqhA [C]
Identifier: 126447234
GI number: 126447234
Start: 1994334
End: 1994942
Strand: Direct
Name: yqhA [C]
Synonym: BMA10247_A2057
Alternate gene names: 126447234
Gene position: 1994334-1994942 (Clockwise)
Preceding gene: 126446981
Following gene: 126447924
Centisome position: 84.77
GC content: 64.7
Gene sequence:
>609_bases ATGTCCGCCGCCCCGACCGATCCGCGCGCCGCCCGCCCGGCCCGCCGCAAGATGCGCCCGTTGCCAGCCGTCATCTTCAT GAGCCGCTGGCTGCAGGTTCCCCTTTATCTGGGCCTGATCGTCGCGCAGGCGATCTACGTGTTCCTGTTCCTGAAGGAAG TGTGGCACCTGCTGTCGCACGCGACGGGCCTCGACGAGACGAACATCATGCTCGCCGTGCTCGGCCTCATCGACGTGGTG ATGATCTCGAACCTGCTCATCATGGTGATCGTCGGCGGATATGAAACTTTCGTGTCGCGCCTGGGCGTCGAGGGGCACCC CGACGAGCCGGAATGGCTCGACCACGTGAACGCGGGCGTGCTGAAAGTGAAGCTGTCGATGGCGCTCATCAGCATCTCGT CGATCCATCTGCTGAAGACGTTCATCAATCCGGACCAGCACACGACGCACGCGATCATGTGGCAGGTGCTGATCCACGTC GCGTTCCTCGTGTCGGCGCTCGTGATGGCGTGGGTCGACCGCCTGACGACGCATACGCACCCCGAGCATTTCCACGAAGC GTCGACGCCACCGTCGGCGCCGCGCGAGCCGGCGCAACAGTCGGCCTGA
Upstream 100 bases:
>100_bases CGCGATGCCGCGCCGCTGCAAGCCGCCCGGCCGACGCGTTACAATAACGCGCTTTTTTTCAAAAACGCTCCATATCCCCG CATCCCCGCTTCGCCCGACC
Downstream 100 bases:
>100_bases GTCGATTCCCATACCCACCGTCCTCACCGAGCCTCAGCCATGACCGTCATCAAACAGGAAGACCTGATCCAGAGCATCGC GGATTCGCTGCAGTACATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MSAAPTDPRAARPARRKMRPLPAVIFMSRWLQVPLYLGLIVAQAIYVFLFLKEVWHLLSHATGLDETNIMLAVLGLIDVV MISNLLIMVIVGGYETFVSRLGVEGHPDEPEWLDHVNAGVLKVKLSMALISISSIHLLKTFINPDQHTTHAIMWQVLIHV AFLVSALVMAWVDRLTTHTHPEHFHEASTPPSAPREPAQQSA
Sequences:
>Translated_202_residues MSAAPTDPRAARPARRKMRPLPAVIFMSRWLQVPLYLGLIVAQAIYVFLFLKEVWHLLSHATGLDETNIMLAVLGLIDVV MISNLLIMVIVGGYETFVSRLGVEGHPDEPEWLDHVNAGVLKVKLSMALISISSIHLLKTFINPDQHTTHAIMWQVLIHV AFLVSALVMAWVDRLTTHTHPEHFHEASTPPSAPREPAQQSA >Mature_201_residues SAAPTDPRAARPARRKMRPLPAVIFMSRWLQVPLYLGLIVAQAIYVFLFLKEVWHLLSHATGLDETNIMLAVLGLIDVVM ISNLLIMVIVGGYETFVSRLGVEGHPDEPEWLDHVNAGVLKVKLSMALISISSIHLLKTFINPDQHTTHAIMWQVLIHVA FLVSALVMAWVDRLTTHTHPEHFHEASTPPSAPREPAQQSA
Specific function: Unknown
COG id: COG2862
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0114 family [H]
Homologues:
Organism=Escherichia coli, GI1789376, Length=162, Percent_Identity=37.6543209876543, Blast_Score=127, Evalue=5e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005134 - InterPro: IPR020761 - InterPro: IPR020765 [H]
Pfam domain/function: PF03350 UPF0114 [H]
EC number: NA
Molecular weight: Translated: 22526; Mature: 22395
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAPTDPRAARPARRKMRPLPAVIFMSRWLQVPLYLGLIVAQAIYVFLFLKEVWHLLSH CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGLDETNIMLAVLGLIDVVMISNLLIMVIVGGYETFVSRLGVEGHPDEPEWLDHVNAGV HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHCCCH LKVKLSMALISISSIHLLKTFINPDQHTTHAIMWQVLIHVAFLVSALVMAWVDRLTTHTH HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PEHFHEASTPPSAPREPAQQSA HHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SAAPTDPRAARPARRKMRPLPAVIFMSRWLQVPLYLGLIVAQAIYVFLFLKEVWHLLSH CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGLDETNIMLAVLGLIDVVMISNLLIMVIVGGYETFVSRLGVEGHPDEPEWLDHVNAGV HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHCCCH LKVKLSMALISISSIHLLKTFINPDQHTTHAIMWQVLIHVAFLVSALVMAWVDRLTTHTH HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PEHFHEASTPPSAPREPAQQSA HHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]