Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is omp32 [H]
Identifier: 126446819
GI number: 126446819
Start: 1027439
End: 1028554
Strand: Direct
Name: omp32 [H]
Synonym: BMA10247_A1086
Alternate gene names: 126446819
Gene position: 1027439-1028554 (Clockwise)
Preceding gene: 126446187
Following gene: 126445776
Centisome position: 43.67
GC content: 66.13
Gene sequence:
>1116_bases ATGGGTTTTCAATCGAGGAAAATGATGGTCGCGCTCGTCGCGGCCGGGCCGGCGCTCGCTTGCGCGCAGACGAGCGTCAC GCTGTACGGCCGCGTCGATGGCGGCGTCGAATATCTGAATCACATCGCGAAGCCGTCGGGCGGCAGCGCGTCGCGCTGGA GCGCCGAGAGCGGCGACTGGGGCACGAGCATGTTCGGCCTGAAGGGCGCCGAGGATCTGGGCGGCCGCACGTCGGCGATC TTCAATCTGGAAACCGCGTTCCAGGTGATGAACGGCACCACGGGCGGCGGCCGGATGTGGTCGCGGCGCGCGTACGTCGG CTTGAAGAACGACACGTGGGGCACGCTGCAGGCGGGCCGAAACCTCTTCATCGACAGCGACGGCGTGTGGGAATTCGATC CGTTCGTCCAGCAGGCGTTCTCGTCGGCGTCGCTCGTGCGCGGGCGCAACTGGCAGCAGACGAGCAACAACGTCGAGTAT CACAGCCCGGTGTTCGGCGGCTTCGACGTGCAGGCGCAGTACGCGTTCGGCAATCAGTCGCGCGGCTTCAACTACGGCGC GCAGGGCGACTTCGGCCGCTCGGAGGGCGTGATGGTCTCGTATCACTCGCCGCTGCTCGACGTGCGCGGCATCTATGACG AACTGCGCGACAGCAACGGCCGGATGAGCAACATCTTCTCCAGCTCGCGCGAGTATTTCATCGGCGCGAACGTGAAGGTG CAGAAATTCAAGATCCAGGGGGCGTACACGCATTACTCGGCGCCCGATACGCCGGCGGGCCTCGCGGACCGCGCCGATCA CTTCTGGCTCGGCGCGACCTATCAGGCAGACCCGCAATGGGCGGTGACGGGCGGCGGCTACTATGTGCGCGTGCGCGGCG GCGACGGCGGCGACGCGTCGCACGATCCGTCCGGCCACGCGATCATGTATGCGCTCGGGACCACTTACAATCTGTCGAAG CGCACGTTCCTCTACGGCACGCTCGCCTACGTGCGCAACGGCGGGAATTCGAATTTCTCGCTGCTCGCGACGCCGCGCGA CGCGACGCCGAACACGAGCCCGCTCGCCGGAGAATCGCAAACGGGCGCGTATGTCGGGATGATGCATACGTTCTGA
Upstream 100 bases:
>100_bases GCCCTGTGCGCGGCTGGCCCCGGACGCTATTCGCTCGATCGCGGCTGAGCGGCGCGCCGGACGTGTTTTGAACCTGAGAG AAGACAACAGGCGGAGAACA
Downstream 100 bases:
>100_bases CGCGCGAAGCGCGCGAGGCGGGAAAGCAAGGGCTTCGGCGTGTCGGCCGAAGCTTTTTTTCACCTTCCGCATTGCCGCGC CTGCGCGCGAACGGGCCCGC
Product: putative outer membrane porin
Products: NA
Alternate protein names: OMP32 [H]
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MGFQSRKMMVALVAAGPALACAQTSVTLYGRVDGGVEYLNHIAKPSGGSASRWSAESGDWGTSMFGLKGAEDLGGRTSAI FNLETAFQVMNGTTGGGRMWSRRAYVGLKNDTWGTLQAGRNLFIDSDGVWEFDPFVQQAFSSASLVRGRNWQQTSNNVEY HSPVFGGFDVQAQYAFGNQSRGFNYGAQGDFGRSEGVMVSYHSPLLDVRGIYDELRDSNGRMSNIFSSSREYFIGANVKV QKFKIQGAYTHYSAPDTPAGLADRADHFWLGATYQADPQWAVTGGGYYVRVRGGDGGDASHDPSGHAIMYALGTTYNLSK RTFLYGTLAYVRNGGNSNFSLLATPRDATPNTSPLAGESQTGAYVGMMHTF
Sequences:
>Translated_371_residues MGFQSRKMMVALVAAGPALACAQTSVTLYGRVDGGVEYLNHIAKPSGGSASRWSAESGDWGTSMFGLKGAEDLGGRTSAI FNLETAFQVMNGTTGGGRMWSRRAYVGLKNDTWGTLQAGRNLFIDSDGVWEFDPFVQQAFSSASLVRGRNWQQTSNNVEY HSPVFGGFDVQAQYAFGNQSRGFNYGAQGDFGRSEGVMVSYHSPLLDVRGIYDELRDSNGRMSNIFSSSREYFIGANVKV QKFKIQGAYTHYSAPDTPAGLADRADHFWLGATYQADPQWAVTGGGYYVRVRGGDGGDASHDPSGHAIMYALGTTYNLSK RTFLYGTLAYVRNGGNSNFSLLATPRDATPNTSPLAGESQTGAYVGMMHTF >Mature_370_residues GFQSRKMMVALVAAGPALACAQTSVTLYGRVDGGVEYLNHIAKPSGGSASRWSAESGDWGTSMFGLKGAEDLGGRTSAIF NLETAFQVMNGTTGGGRMWSRRAYVGLKNDTWGTLQAGRNLFIDSDGVWEFDPFVQQAFSSASLVRGRNWQQTSNNVEYH SPVFGGFDVQAQYAFGNQSRGFNYGAQGDFGRSEGVMVSYHSPLLDVRGIYDELRDSNGRMSNIFSSSREYFIGANVKVQ KFKIQGAYTHYSAPDTPAGLADRADHFWLGATYQADPQWAVTGGGYYVRVRGGDGGDASHDPSGHAIMYALGTTYNLSKR TFLYGTLAYVRNGGNSNFSLLATPRDATPNTSPLAGESQTGAYVGMMHTF
Specific function: Forms anion selective channels [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To bacterial outer membrane proteins and porins [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001702 - InterPro: IPR002299 [H]
Pfam domain/function: PF00267 Porin_1 [H]
EC number: NA
Molecular weight: Translated: 40103; Mature: 39972
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFQSRKMMVALVAAGPALACAQTSVTLYGRVDGGVEYLNHIAKPSGGSASRWSAESGDW CCCCCCEEEEEEEECCCCEEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCC GTSMFGLKGAEDLGGRTSAIFNLETAFQVMNGTTGGGRMWSRRAYVGLKNDTWGTLQAGR CCEECCCCCCHHCCCCEEEEEEHHHHHHHHCCCCCCCCEECCEEEEEECCCCCEEHHCCC NLFIDSDGVWEFDPFVQQAFSSASLVRGRNWQQTSNNVEYHSPVFGGFDVQAQYAFGNQS EEEECCCCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCEECCCCCCCEEEEEEEEECCCC RGFNYGAQGDFGRSEGVMVSYHSPLLDVRGIYDELRDSNGRMSNIFSSSREYFIGANVKV CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCEEE QKFKIQGAYTHYSAPDTPAGLADRADHFWLGATYQADPQWAVTGGGYYVRVRGGDGGDAS EEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCEEEEEEECCCCCCCC HDPSGHAIMYALGTTYNLSKRTFLYGTLAYVRNGGNSNFSLLATPRDATPNTSPLAGESQ CCCCCCEEEEEECCEEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC TGAYVGMMHTF CCEEEEEEECC >Mature Secondary Structure GFQSRKMMVALVAAGPALACAQTSVTLYGRVDGGVEYLNHIAKPSGGSASRWSAESGDW CCCCCEEEEEEEECCCCEEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCC GTSMFGLKGAEDLGGRTSAIFNLETAFQVMNGTTGGGRMWSRRAYVGLKNDTWGTLQAGR CCEECCCCCCHHCCCCEEEEEEHHHHHHHHCCCCCCCCEECCEEEEEECCCCCEEHHCCC NLFIDSDGVWEFDPFVQQAFSSASLVRGRNWQQTSNNVEYHSPVFGGFDVQAQYAFGNQS EEEECCCCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCEECCCCCCCEEEEEEEEECCCC RGFNYGAQGDFGRSEGVMVSYHSPLLDVRGIYDELRDSNGRMSNIFSSSREYFIGANVKV CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCEEE QKFKIQGAYTHYSAPDTPAGLADRADHFWLGATYQADPQWAVTGGGYYVRVRGGDGGDAS EEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCEEEEEEECCCCCCCC HDPSGHAIMYALGTTYNLSKRTFLYGTLAYVRNGGNSNFSLLATPRDATPNTSPLAGESQ CCCCCCEEEEEECCEEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC TGAYVGMMHTF CCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1848840 [H]