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The map label for this gene is ycgA [H]

Identifier: 126442981

GI number: 126442981

Start: 451833

End: 453347

Strand: Reverse

Name: ycgA [H]

Synonym: BURPS668_A0496

Alternate gene names: 126442981

Gene position: 453347-451833 (Counterclockwise)

Preceding gene: 126442953

Following gene: 126444447

Centisome position: 14.5

GC content: 69.44

Gene sequence:

>1515_bases
ATGCTCGCCGCGCCCGCGCATTGCGCCGACACGCCTCGAACGCCCGATATGCCCGATATGCCCGATATGCCCGACACGCG
CGGCACGCCCGCGCACGACGCCTCGCCGCGCCCCGAGCACAAGCCGCACGGCAAGATGCTGCATCCGGTCGTGATGATGA
TCTGGGTGCTCGCGGCCGCGGTCGCGCTCACGTGGCTCGTCGATTCCGGCCGCTACGCGCGCAACGGCAAGCTCGTCGTG
CCGGGCACCTATCAGGTCGTGCCGAAGGCGACGTCGCTCGCGACGCTCGTCGCGCCCGCCGTCAGCAAGAGCACGCCGCA
GTTCGCAATGCCCGCGAGCCTCGTGTCCGCGTTCGTCGCGGTGCCGGGCGGGCTCGTGAAGAACGCGCCGCTCATCGTGA
TGGTGATGTTCGTCGGCGGCATGTTCGGCGTGATGCGCAGGACAGGCGTCGTCGACGCGGGTATCGACCGGCTGCTGCAG
CTCACCGGCAACGACGTCTATCTGCTGACGCCGCTCCTGATGATCCTGATCGGGCTCGGCAGCACGCTGCTCGGCTTCAT
CTCCGAGTATCTGGTGATCATTCCGATGGTGATGGTGATCGCGAAGCGGCTCGGGCTGTCGAACCTGTTCGCGGTCGCGC
TCGTCGCGCTCGCCGCGAAGATCGGCTACATCGCGTCCGTCACGAATCCGCTCGCGCTCGCGGTCGCGCAGCCGCTCGTC
GGCGTGCCGCTGTTCAGCGGCGTCGCGCTGCGCGCCGCGGTGTTCGCCGTCTATCTGGCGCTCGGCATCCTCTATCTGCT
GCATCACGTGAAGCGCAGCGGCTATCGGCGCGAGCGCGCGAAGGCCCTCGCGCACGCGCACGGCGTCGCGCGCCTGTCGG
TGCGCCACCAGGCGACGCTCGCGCTGCTCGCGGCGGCGGTCGCGATGCTCGTCTTCGGCACGCGCGAGCTGAAGTGGGGC
AACGTCGAGCTTGCCGCGTTCTACGCGTTCGTCGCGATCGCGGCCGCCGCGATCGGCGGGCTCGACTCGCGCAGCGCGGC
CGACGCGTTCGTCGACGGCATGAAGAGCATGATGCTCGCGGCGCTGCTGATGGGGCTCGCCGCGTCGGTCGAGTTGCTGC
TGCAGAACAGCCTCGTGCTCGACACGCTGATCCATCTGTTCACCCGGCTCGCGAACGGCCAATCGCCGGTGTGGGTCGCG
AACGGGCTGATGGCCGTGCAGATGGTGCTCGACGTGTTCATTCCGTCGGTGTCGGGCAAGGCGGCCGTGAGCATGCCGAT
CATCGGGCCGATCGCGCAGCTCTCCGGCGTGAGCGGGCAGACCTCGGTGCTCGCGTTCGTGCTGGGCGGCGGGCTCACGA
ACCTCGTCACGCCGACCTCTGGCATGCTGCTCGCGTATCTCGCGACCGCGCGCGTCGATTTCGGCGCGTGGCTGCGGTTC
GTGCTGCCGCTGTTCGCCGTGCTGCTCGCGCTGTCGTGCGGCGTGCTCGCGTTCGCCGTGCAGATCGGCTACTGA

Upstream 100 bases:

>100_bases
TCGAGCGGCTGCAAGCCTGCAGCCACGCGATCTCCGCCGAACTCGGCTACGTCCCGGCGCGCGCCGCGCCGCAACCCGCA
TGAAAGCCCGCTCCCCCGCC

Downstream 100 bases:

>100_bases
CGGGCGCGCGGGCCGCTCAGCGCGCGACGGCGGCGGGCATCCGAGCGGCGGCCGAGGTCGTCGACGCGGCCGATGCCGAC
GATGCCGCCGCGGCCGACGT

Product: C4-dicarboxylate anaerobic carrier family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MLAAPAHCADTPRTPDMPDMPDMPDTRGTPAHDASPRPEHKPHGKMLHPVVMMIWVLAAAVALTWLVDSGRYARNGKLVV
PGTYQVVPKATSLATLVAPAVSKSTPQFAMPASLVSAFVAVPGGLVKNAPLIVMVMFVGGMFGVMRRTGVVDAGIDRLLQ
LTGNDVYLLTPLLMILIGLGSTLLGFISEYLVIIPMVMVIAKRLGLSNLFAVALVALAAKIGYIASVTNPLALAVAQPLV
GVPLFSGVALRAAVFAVYLALGILYLLHHVKRSGYRRERAKALAHAHGVARLSVRHQATLALLAAAVAMLVFGTRELKWG
NVELAAFYAFVAIAAAAIGGLDSRSAADAFVDGMKSMMLAALLMGLAASVELLLQNSLVLDTLIHLFTRLANGQSPVWVA
NGLMAVQMVLDVFIPSVSGKAAVSMPIIGPIAQLSGVSGQTSVLAFVLGGGLTNLVTPTSGMLLAYLATARVDFGAWLRF
VLPLFAVLLALSCGVLAFAVQIGY

Sequences:

>Translated_504_residues
MLAAPAHCADTPRTPDMPDMPDMPDTRGTPAHDASPRPEHKPHGKMLHPVVMMIWVLAAAVALTWLVDSGRYARNGKLVV
PGTYQVVPKATSLATLVAPAVSKSTPQFAMPASLVSAFVAVPGGLVKNAPLIVMVMFVGGMFGVMRRTGVVDAGIDRLLQ
LTGNDVYLLTPLLMILIGLGSTLLGFISEYLVIIPMVMVIAKRLGLSNLFAVALVALAAKIGYIASVTNPLALAVAQPLV
GVPLFSGVALRAAVFAVYLALGILYLLHHVKRSGYRRERAKALAHAHGVARLSVRHQATLALLAAAVAMLVFGTRELKWG
NVELAAFYAFVAIAAAAIGGLDSRSAADAFVDGMKSMMLAALLMGLAASVELLLQNSLVLDTLIHLFTRLANGQSPVWVA
NGLMAVQMVLDVFIPSVSGKAAVSMPIIGPIAQLSGVSGQTSVLAFVLGGGLTNLVTPTSGMLLAYLATARVDFGAWLRF
VLPLFAVLLALSCGVLAFAVQIGY
>Mature_504_residues
MLAAPAHCADTPRTPDMPDMPDMPDTRGTPAHDASPRPEHKPHGKMLHPVVMMIWVLAAAVALTWLVDSGRYARNGKLVV
PGTYQVVPKATSLATLVAPAVSKSTPQFAMPASLVSAFVAVPGGLVKNAPLIVMVMFVGGMFGVMRRTGVVDAGIDRLLQ
LTGNDVYLLTPLLMILIGLGSTLLGFISEYLVIIPMVMVIAKRLGLSNLFAVALVALAAKIGYIASVTNPLALAVAQPLV
GVPLFSGVALRAAVFAVYLALGILYLLHHVKRSGYRRERAKALAHAHGVARLSVRHQATLALLAAAVAMLVFGTRELKWG
NVELAAFYAFVAIAAAAIGGLDSRSAADAFVDGMKSMMLAALLMGLAASVELLLQNSLVLDTLIHLFTRLANGQSPVWVA
NGLMAVQMVLDVFIPSVSGKAAVSMPIIGPIAQLSGVSGQTSVLAFVLGGGLTNLVTPTSGMLLAYLATARVDFGAWLRF
VLPLFAVLLALSCGVLAFAVQIGY

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfcC and H.influenzae HI_0594 [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=401, Percent_Identity=30.1745635910224, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 52778; Mature: 52778

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAPAHCADTPRTPDMPDMPDMPDTRGTPAHDASPRPEHKPHGKMLHPVVMMIWVLAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VALTWLVDSGRYARNGKLVVPGTYQVVPKATSLATLVAPAVSKSTPQFAMPASLVSAFVA
HHHHHHHCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
VPGGLVKNAPLIVMVMFVGGMFGVMRRTGVVDAGIDRLLQLTGNDVYLLTPLLMILIGLG
CCCCHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
STLLGFISEYLVIIPMVMVIAKRLGLSNLFAVALVALAAKIGYIASVTNPLALAVAQPLV
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GVPLFSGVALRAAVFAVYLALGILYLLHHVKRSGYRRERAKALAHAHGVARLSVRHQATL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAAAVAMLVFGTRELKWGNVELAAFYAFVAIAAAAIGGLDSRSAADAFVDGMKSMMLA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ALLMGLAASVELLLQNSLVLDTLIHLFTRLANGQSPVWVANGLMAVQMVLDVFIPSVSGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCC
AAVSMPIIGPIAQLSGVSGQTSVLAFVLGGGLTNLVTPTSGMLLAYLATARVDFGAWLRF
CEEECCCHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VLPLFAVLLALSCGVLAFAVQIGY
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLAAPAHCADTPRTPDMPDMPDMPDTRGTPAHDASPRPEHKPHGKMLHPVVMMIWVLAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VALTWLVDSGRYARNGKLVVPGTYQVVPKATSLATLVAPAVSKSTPQFAMPASLVSAFVA
HHHHHHHCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
VPGGLVKNAPLIVMVMFVGGMFGVMRRTGVVDAGIDRLLQLTGNDVYLLTPLLMILIGLG
CCCCHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
STLLGFISEYLVIIPMVMVIAKRLGLSNLFAVALVALAAKIGYIASVTNPLALAVAQPLV
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GVPLFSGVALRAAVFAVYLALGILYLLHHVKRSGYRRERAKALAHAHGVARLSVRHQATL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAAAVAMLVFGTRELKWGNVELAAFYAFVAIAAAAIGGLDSRSAADAFVDGMKSMMLA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ALLMGLAASVELLLQNSLVLDTLIHLFTRLANGQSPVWVANGLMAVQMVLDVFIPSVSGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCC
AAVSMPIIGPIAQLSGVSGQTSVLAFVLGGGLTNLVTPTSGMLLAYLATARVDFGAWLRF
CEEECCCHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VLPLFAVLLALSCGVLAFAVQIGY
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]