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The map label for this gene is sodA [H]

Identifier: 126207739

GI number: 126207739

Start: 274183

End: 274824

Strand: Direct

Name: sodA [H]

Synonym: APL_0251

Alternate gene names: 126207739

Gene position: 274183-274824 (Clockwise)

Preceding gene: 126207734

Following gene: 126207741

Centisome position: 12.05

GC content: 45.95

Gene sequence:

>642_bases
ATGGCATATCAATTACCAGAGTTAGGCTACGCTTATGATGCGTTAGAGCCACATTTCGATAAAGCAACGATGGAAATCCA
TCATACTAAACACCACCAAACCTACGTAAATAATGCAAATGCGGCGTTAGAAGCTCATCCGGAGCTTTTAGAAAAATGCC
CGGGTGCGTTAATTAAAGATTTAAGCCAAGTGCCTGCTGAGAAACGTACTGCGGTACGTAACAATGTCGGCGGTCACGTA
AACCACACGCTTTTCTGGAAAGGCTTGAAAACTGGTACGACTTTACAAGGCGCATTAAAAGATGCGATCGTACGTGATTT
CGGTTCGGTAGAAGCGTTCCAAGCGGAATTTGAAAAAGCGGCGGCAACGCGTTTCGGTTCAGGTTGGGCATGGTTAGTGG
TTGAAGGCGGTAAATTAGCGGTTGTTTCAACGGCAAACCAAGATAACCCGATTATGGGTAAAGAAGTTGCGGGCGTTTCA
GGTTTCCCTATTTTAGCTTTAGACGTTTGGGAACACGCTTACTACTTACATTACCAAAACCGCCGTCCGGACTACATCAA
AGCGTTCTGGAACGTGGTAAACTGGGACGAAGCGGCTCGTCGTTTTGAAGAACACGCTTCACACTGCGGTTGTGCAAAAT
AA

Upstream 100 bases:

>100_bases
TTCTATTTTTTTGATTTAGATTAAAAAATTATGTCTTCTTAAGTCTATTTTTGGTATATTTGATACGATTTTTATTCACC
TAACAAAAAGGACCCTAAAA

Downstream 100 bases:

>100_bases
TTAAGATTGAGTTTTCTTAATCTAAGCGAATAAATAAGCGGTCGTTTTTGCAAATTTTCTTGTAAAAACGACCGCTTTTT
ATATGAATTATTCGTATTCA

Product: manganese superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MAYQLPELGYAYDALEPHFDKATMEIHHTKHHQTYVNNANAALEAHPELLEKCPGALIKDLSQVPAEKRTAVRNNVGGHV
NHTLFWKGLKTGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVVEGGKLAVVSTANQDNPIMGKEVAGVS
GFPILALDVWEHAYYLHYQNRRPDYIKAFWNVVNWDEAARRFEEHASHCGCAK

Sequences:

>Translated_213_residues
MAYQLPELGYAYDALEPHFDKATMEIHHTKHHQTYVNNANAALEAHPELLEKCPGALIKDLSQVPAEKRTAVRNNVGGHV
NHTLFWKGLKTGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVVEGGKLAVVSTANQDNPIMGKEVAGVS
GFPILALDVWEHAYYLHYQNRRPDYIKAFWNVVNWDEAARRFEEHASHCGCAK
>Mature_212_residues
AYQLPELGYAYDALEPHFDKATMEIHHTKHHQTYVNNANAALEAHPELLEKCPGALIKDLSQVPAEKRTAVRNNVGGHVN
HTLFWKGLKTGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVVEGGKLAVVSTANQDNPIMGKEVAGVSG
FPILALDVWEHAYYLHYQNRRPDYIKAFWNVVNWDEAARRFEEHASHCGCAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=204, Percent_Identity=43.6274509803922, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782305, Length=204, Percent_Identity=43.6274509803922, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=37.6237623762376, Blast_Score=133, Evalue=1e-31,
Organism=Escherichia coli, GI1790342, Length=202, Percent_Identity=75.2475247524752, Blast_Score=327, Evalue=4e-91,
Organism=Escherichia coli, GI1787946, Length=205, Percent_Identity=41.4634146341463, Blast_Score=152, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=39.9014778325123, Blast_Score=146, Evalue=9e-36,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=39.9014778325123, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=44.0758293838863, Blast_Score=156, Evalue=2e-39,
Organism=Drosophila melanogaster, GI17136812, Length=212, Percent_Identity=42.4528301886792, Blast_Score=159, Evalue=1e-39,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23757; Mature: 23626

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQLPELGYAYDALEPHFDKATMEIHHTKHHQTYVNNANAALEAHPELLEKCPGALIKD
CCCCCCCCCCHHHCCCCCCCCHHEEEHHHHHHHHHHCCCCCHHHCCHHHHHHCCCHHHHH
LSQVPAEKRTAVRNNVGGHVNHTLFWKGLKTGTTLQGALKDAIVRDFGSVEAFQAEFEKA
HHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
AATRFGSGWAWLVVEGGKLAVVSTANQDNPIMGKEVAGVSGFPILALDVWEHAYYLHYQN
HHHHCCCCEEEEEEECCEEEEEEECCCCCCCCCHHCCCCCCCCEEEEEHHHHEEEEEECC
RRPDYIKAFWNVVNWDEAARRFEEHASHCGCAK
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AYQLPELGYAYDALEPHFDKATMEIHHTKHHQTYVNNANAALEAHPELLEKCPGALIKD
CCCCCCCCCHHHCCCCCCCCHHEEEHHHHHHHHHHCCCCCHHHCCHHHHHHCCCHHHHH
LSQVPAEKRTAVRNNVGGHVNHTLFWKGLKTGTTLQGALKDAIVRDFGSVEAFQAEFEKA
HHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
AATRFGSGWAWLVVEGGKLAVVSTANQDNPIMGKEVAGVSGFPILALDVWEHAYYLHYQN
HHHHCCCCEEEEEEECCEEEEEEECCCCCCCCCHHCCCCCCCCEEEEEHHHHEEEEEECC
RRPDYIKAFWNVVNWDEAARRFEEHASHCGCAK
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA