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The map label for this gene is cdaR [C]

Identifier: 126207628

GI number: 126207628

Start: 155925

End: 157040

Strand: Direct

Name: cdaR [C]

Synonym: APL_0140

Alternate gene names: 126207628

Gene position: 155925-157040 (Clockwise)

Preceding gene: 126207625

Following gene: 126207629

Centisome position: 6.86

GC content: 39.78

Gene sequence:

>1116_bases
ATGATATTAAAACTTGATATACCCACCGCCCAAACGATTGTAAAACGCACTATGCAAATTATTCCCAATTCCGTAAATGT
TATGGATGAAGAAGGAATCATTATTGCTTCGGGGGATCCTTCTCGGTTAGGCGAACGCCATACCGGTGCGGTGATTGCTT
TGCGTAAGAAACAATCGGTTGAAATTGATGAAAATTTAGCAAAACAATGGAATTACGAAGCGAGAGAGGGATTGAATCTC
CCCATCGCTTATTTAGGTAAAACCGTTGGGGTAATCGGTATATCCGGCAAGCCGAATGAAGTTCGGCAGTACGGCGAGTT
AGTGAAAATGGCGGCGGAATTGATCGTAGAGCAGTCGGTTTTACTGGCGAAAGAGCGTTGGCAACAACGCTACAAAGAAG
AATTTATTCGTCAGTTATTACGAGGAGCATTAAGCGAAGCGGAAATTACGCAGCAAGCGGTCTTTTTTAAACTGGATTCG
ACCAAGCCGTTAGTGGCAATGATAATTAAAATGGAGCAACCGGATGCCGAAAAACTGCAGTTATTGCTAAATCATTTGGA
ACTGAATTCTAAACATATTGCTTTGGCGGTAATGGATTTGGATAAACTGGTACTACTGAAAACGGAAGATGAGTTTACTC
ATTTGTGTAAGGATAGGGGACTATTGTCTTTACTGCCGGAACATAATCGCCATCAAGAATATAAAATCGTGGTCGGGGCA
AAGGTCACGCATTTTCATCAGGCGAGTTTTTCTTATCAATCGGCATTACATACCTTATCTTATGCGGAACAATTACGTTT
GAAGAAGCAAATCTTACTTTTTTCCGATTATAAATTACCTGCCTTATTGGCTGATTTCGCCAAAACATGGCAAAGCGAAG
AATTGCTCTCGCCGTTTAAGATCTTGTTAGCGCAAGACGGCAAAGCGACGCTATTTAAAAGTCTGCAACAATATTTTTTG
TCAAATTGTGATCTGGCTCACGCTTCGGAAAAATTGTTTATTCATCCGAATACGCTACGTTATCGTTTAGAAAAAATTGA
GCAAATAACATCCTTATCTTTCAATAAGATAGAAGACAAATTTATTCTTTATTTAGGCGCTTCCCTGTTAAAATAA

Upstream 100 bases:

>100_bases
TTATCTATCGTTTTCGTTGTTTTCCAGCGCGATACCCTAAATGCTATTTTAACGGACTCGGTTACACTAAAAGGTAATTC
ATATCGAAAGAAGGTTAGTT

Downstream 100 bases:

>100_bases
TTTGTATTTTTATCTAAAAAGATGCAAATATTTTATTTGTTTTTTGTTCTTTTTAATAACGACTTTTGGGGTGAAATTTA
GATAATAAGTGCCATTCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MILKLDIPTAQTIVKRTMQIIPNSVNVMDEEGIIIASGDPSRLGERHTGAVIALRKKQSVEIDENLAKQWNYEAREGLNL
PIAYLGKTVGVIGISGKPNEVRQYGELVKMAAELIVEQSVLLAKERWQQRYKEEFIRQLLRGALSEAEITQQAVFFKLDS
TKPLVAMIIKMEQPDAEKLQLLLNHLELNSKHIALAVMDLDKLVLLKTEDEFTHLCKDRGLLSLLPEHNRHQEYKIVVGA
KVTHFHQASFSYQSALHTLSYAEQLRLKKQILLFSDYKLPALLADFAKTWQSEELLSPFKILLAQDGKATLFKSLQQYFL
SNCDLAHASEKLFIHPNTLRYRLEKIEQITSLSFNKIEDKFILYLGASLLK

Sequences:

>Translated_371_residues
MILKLDIPTAQTIVKRTMQIIPNSVNVMDEEGIIIASGDPSRLGERHTGAVIALRKKQSVEIDENLAKQWNYEAREGLNL
PIAYLGKTVGVIGISGKPNEVRQYGELVKMAAELIVEQSVLLAKERWQQRYKEEFIRQLLRGALSEAEITQQAVFFKLDS
TKPLVAMIIKMEQPDAEKLQLLLNHLELNSKHIALAVMDLDKLVLLKTEDEFTHLCKDRGLLSLLPEHNRHQEYKIVVGA
KVTHFHQASFSYQSALHTLSYAEQLRLKKQILLFSDYKLPALLADFAKTWQSEELLSPFKILLAQDGKATLFKSLQQYFL
SNCDLAHASEKLFIHPNTLRYRLEKIEQITSLSFNKIEDKFILYLGASLLK
>Mature_371_residues
MILKLDIPTAQTIVKRTMQIIPNSVNVMDEEGIIIASGDPSRLGERHTGAVIALRKKQSVEIDENLAKQWNYEAREGLNL
PIAYLGKTVGVIGISGKPNEVRQYGELVKMAAELIVEQSVLLAKERWQQRYKEEFIRQLLRGALSEAEITQQAVFFKLDS
TKPLVAMIIKMEQPDAEKLQLLLNHLELNSKHIALAVMDLDKLVLLKTEDEFTHLCKDRGLLSLLPEHNRHQEYKIVVGA
KVTHFHQASFSYQSALHTLSYAEQLRLKKQILLFSDYKLPALLADFAKTWQSEELLSPFKILLAQDGKATLFKSLQQYFL
SNCDLAHASEKLFIHPNTLRYRLEKIEQITSLSFNKIEDKFILYLGASLLK

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=378, Percent_Identity=32.5396825396825, Blast_Score=203, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 42334; Mature: 42334

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKLDIPTAQTIVKRTMQIIPNSVNVMDEEGIIIASGDPSRLGERHTGAVIALRKKQSV
CEEEECCCHHHHHHHHHHHHCCCCCCEECCCCEEEECCCHHHCCCCCCCEEEEEECCCCC
EIDENLAKQWNYEAREGLNLPIAYLGKTVGVIGISGKPNEVRQYGELVKMAAELIVEQSV
CHHHHHHHHCCCHHHCCCCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LLAKERWQQRYKEEFIRQLLRGALSEAEITQQAVFFKLDSTKPLVAMIIKMEQPDAEKLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHEEECCCCCHHHHH
LLLNHLELNSKHIALAVMDLDKLVLLKTEDEFTHLCKDRGLLSLLPEHNRHQEYKIVVGA
HHHHHHHCCCCEEEEEEECCCEEEEEECCHHHHHHHHHCCCEECCCCCCCCCEEEEEEEC
KVTHFHQASFSYQSALHTLSYAEQLRLKKQILLFSDYKLPALLADFAKTWQSEELLSPFK
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCHHHHHHHH
ILLAQDGKATLFKSLQQYFLSNCDLAHASEKLFIHPNTLRYRLEKIEQITSLSFNKIEDK
HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCHHHHHHHH
FILYLGASLLK
HHHHHHHHHCC
>Mature Secondary Structure
MILKLDIPTAQTIVKRTMQIIPNSVNVMDEEGIIIASGDPSRLGERHTGAVIALRKKQSV
CEEEECCCHHHHHHHHHHHHCCCCCCEECCCCEEEECCCHHHCCCCCCCEEEEEECCCCC
EIDENLAKQWNYEAREGLNLPIAYLGKTVGVIGISGKPNEVRQYGELVKMAAELIVEQSV
CHHHHHHHHCCCHHHCCCCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LLAKERWQQRYKEEFIRQLLRGALSEAEITQQAVFFKLDSTKPLVAMIIKMEQPDAEKLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHEEECCCCCHHHHH
LLLNHLELNSKHIALAVMDLDKLVLLKTEDEFTHLCKDRGLLSLLPEHNRHQEYKIVVGA
HHHHHHHCCCCEEEEEEECCCEEEEEECCHHHHHHHHHCCCEECCCCCCCCCEEEEEEEC
KVTHFHQASFSYQSALHTLSYAEQLRLKKQILLFSDYKLPALLADFAKTWQSEELLSPFK
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCHHHHHHHH
ILLAQDGKATLFKSLQQYFLSNCDLAHASEKLFIHPNTLRYRLEKIEQITSLSFNKIEDK
HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCHHHHHHHH
FILYLGASLLK
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]