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The map label for this gene is dppB [H]

Identifier: 126207553

GI number: 126207553

Start: 78499

End: 79503

Strand: Direct

Name: dppB [H]

Synonym: APL_0065

Alternate gene names: 126207553

Gene position: 78499-79503 (Clockwise)

Preceding gene: 126207552

Following gene: 126207554

Centisome position: 3.45

GC content: 41.29

Gene sequence:

>1005_bases
ATGTTTTCATTTATTCTTAAACGTCTTTTGATGGTTATCCCAACCTTTTTGGCGATAACGTTAATTACTTTTGCCTTAGT
GCATTTAATTCCGGGCGATCCGATTGAAATTCGGATGGGGGAACGAGGTCTAGATCCGGCGGTTCACGCTCAGATGATGG
CTCAGCTTGGTTTAGATTTACCCTTACCTGAACAATATTTTAATTATATTAAGGGAATCTTTCAGGGCGATCTCGGCAAT
TCATTCCGTAATAACGAACCGGTGTTAAAAGAATTTTTTACCCTATTCCCGGCAACGGTTGAATTAGCCTTCTTTGCATT
ATTATGGTCGCTCGTATTTGGGATTTTCCTTGGCGTAATTGCCGCAGTGAAGAAAGATTCTTGGATTTCCCATACGGTTA
CTACTTTATCTTTAACCGGCTATTCGATGCCGATTTTCTGGTGGGGTCTAATCTTAATTCTCTATTTTTCCACACCGCTG
GGCTTACCGGCTTCAGGGCGTTTGCCTTCCGAATATTGGATTGAAGCGGAAACCGGCTTTATGCTGTATGACACTTGGGT
TTCAGATGAGCCGGGAGCATTTATCGCTGCAATTAAATCGCTAATTTTACCTTCGATCGTATTAGGTACTATTCCGTTGG
CGGTGGTAACTCGTATGACTCGCTCTTCAATGTTGGAAGTGTTAGGCGAAGATTATATTCGTACCGCAAAAGCAAAAGGT
TTGAATACTACCCGTATTGTGATTGTCCATGCGTTACGTAATGCTTTGATTCCGGTAGTTACCGTTGTGGGATTAATTGT
GGGGCAGTTACTTTCCGGTGCGGTACTTACCGAAAATATTTTCTCGTGGCCGGGTATCGGTAAATGGATTATTGATGCGA
TTAATGCGCGTGACTATCCGGTTTTACAAGGTTCGGTATTAATTATTGCAACGATTATTATTTTAGTGAACTTAACCGTT
GATTTAATTTATGGTGTTGTTAACCCAAGAATTCGACATCACTAA

Upstream 100 bases:

>100_bases
GGCAGAGAGTTATCGGCTATTTGTAAAAAATTCGCTGAATTTTACCGCTTAATGCCGTGTTTTTCATATTTTCCGTGGTT
CAAATAACGAGTATTACCTA

Downstream 100 bases:

>100_bases
GCCTATTTTTCAGCTTTTACAAGCGGTTAAATTTACGCAACATTTTGCAAAATGATTTGAATGGAGTGAGATACATAATG
TCTTCAACAACCCTTTCGGC

Product: dipeptide transport system permease protein DppB

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MFSFILKRLLMVIPTFLAITLITFALVHLIPGDPIEIRMGERGLDPAVHAQMMAQLGLDLPLPEQYFNYIKGIFQGDLGN
SFRNNEPVLKEFFTLFPATVELAFFALLWSLVFGIFLGVIAAVKKDSWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
GLPASGRLPSEYWIEAETGFMLYDTWVSDEPGAFIAAIKSLILPSIVLGTIPLAVVTRMTRSSMLEVLGEDYIRTAKAKG
LNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVLTENIFSWPGIGKWIIDAINARDYPVLQGSVLIIATIIILVNLTV
DLIYGVVNPRIRHH

Sequences:

>Translated_334_residues
MFSFILKRLLMVIPTFLAITLITFALVHLIPGDPIEIRMGERGLDPAVHAQMMAQLGLDLPLPEQYFNYIKGIFQGDLGN
SFRNNEPVLKEFFTLFPATVELAFFALLWSLVFGIFLGVIAAVKKDSWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
GLPASGRLPSEYWIEAETGFMLYDTWVSDEPGAFIAAIKSLILPSIVLGTIPLAVVTRMTRSSMLEVLGEDYIRTAKAKG
LNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVLTENIFSWPGIGKWIIDAINARDYPVLQGSVLIIATIIILVNLTV
DLIYGVVNPRIRHH
>Mature_334_residues
MFSFILKRLLMVIPTFLAITLITFALVHLIPGDPIEIRMGERGLDPAVHAQMMAQLGLDLPLPEQYFNYIKGIFQGDLGN
SFRNNEPVLKEFFTLFPATVELAFFALLWSLVFGIFLGVIAAVKKDSWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
GLPASGRLPSEYWIEAETGFMLYDTWVSDEPGAFIAAIKSLILPSIVLGTIPLAVVTRMTRSSMLEVLGEDYIRTAKAKG
LNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVLTENIFSWPGIGKWIIDAINARDYPVLQGSVLIIATIIILVNLTV
DLIYGVVNPRIRHH

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=60.8308605341246, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=39.1044776119403, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1787761, Length=334, Percent_Identity=44.0119760479042, Blast_Score=238, Evalue=6e-64,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=35.0148367952522, Blast_Score=200, Evalue=9e-53,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=36.8029739776952, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=33.7313432835821, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1788504, Length=376, Percent_Identity=27.1276595744681, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36978; Mature: 36978

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSFILKRLLMVIPTFLAITLITFALVHLIPGDPIEIRMGERGLDPAVHAQMMAQLGLDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
PLPEQYFNYIKGIFQGDLGNSFRNNEPVLKEFFTLFPATVELAFFALLWSLVFGIFLGVI
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKKDSWISHTVTTLSLTGYSMPIFWWGLILILYFSTPLGLPASGRLPSEYWIEAETGF
HHHHCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCE
MLYDTWVSDEPGAFIAAIKSLILPSIVLGTIPLAVVTRMTRSSMLEVLGEDYIRTAKAKG
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVLTENIFSWPGIGKWIIDAINARDYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHCCCCCC
VLQGSVLIIATIIILVNLTVDLIYGVVNPRIRHH
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MFSFILKRLLMVIPTFLAITLITFALVHLIPGDPIEIRMGERGLDPAVHAQMMAQLGLDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
PLPEQYFNYIKGIFQGDLGNSFRNNEPVLKEFFTLFPATVELAFFALLWSLVFGIFLGVI
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKKDSWISHTVTTLSLTGYSMPIFWWGLILILYFSTPLGLPASGRLPSEYWIEAETGF
HHHHCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCE
MLYDTWVSDEPGAFIAAIKSLILPSIVLGTIPLAVVTRMTRSSMLEVLGEDYIRTAKAKG
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVLTENIFSWPGIGKWIIDAINARDYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHCCCCCC
VLQGSVLIIATIIILVNLTVDLIYGVVNPRIRHH
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]