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The map label for this gene is ybiS [H]

Identifier: 126175624

GI number: 126175624

Start: 4017289

End: 4018203

Strand: Direct

Name: ybiS [H]

Synonym: Sbal_3427

Alternate gene names: 126175624

Gene position: 4017289-4018203 (Clockwise)

Preceding gene: 126175621

Following gene: 126175626

Centisome position: 78.35

GC content: 47.43

Gene sequence:

>915_bases
ATGAGTATGCTTCGCACCACTGCTTTATTATTGACTTTGGTTTTCCCTAGTCTGTCCGCTTTAGCAACGGAATATCCTTT
ACCAGCCGCCCAAAGCAGGCTAATTGGCGAGAACCAGTATTATACGGTTCCAGAGGGTAAACACACTCTCGAAGATATTG
CTGCCAAATACCAGCTCGGTCTCAGTAACTTACTCGAAGCTAACCCAGGTGTAGATCCATTTCTGCCAAAGCCAGGTAGC
CAACTGTTAATTCCATTACAACTGATCCTGCCTAACGCTCCCCGTGAAGGCATAGTGATCAACGTGGCCGAAATGCGTTT
GTACTACTATCCAAAAGGCAAAAAGACAGTTGAAGTCCTGCCTATTGGTATTGGTCAGATTGGTAAAGACACGCCAGAAA
ACTGGGTGACCTCAGTACAACGTAAGCGTGCCAATCCAACTTGGACACCGACGCCACGCATTCGTAAAGAATATGCTGCT
AAGGGTGAAATCCTGCCAGCAGTATGGCCAGCGGGTCCAGACAACCCTATGGGACTGTACGCGCTGTATATCGGCAACTT
GTATGCGATTCACGGTACTAACGCGAGTTTCGGTATCGGTTTACGTGTCAGCCAAGGTTGTGTGCGTTTACGCCATGAAG
ATATCGAGCACTTGTTCAAGAATGTCCCAGTGGGAACCCGCGTTCAATTCGTGAACCAGCCGATTAAAGCAACCGAAGAG
CCAGACGGTAAGCGCTACTTAGCCGTGCATCAACCTCTGTCTCGCACTGTGGCTGAGTTTGAATCCAATGAGCCAGTTGC
GATTTCATTACCTAGAGATATCGCCAAGTTTATCGCTAAAGCTGACACTAATTCTTCTGTGATCAAAAAGCTGCTCGATG
AACGTACTGGTGTACCGATGCGAATTAATCAATAA

Upstream 100 bases:

>100_bases
CGCGCCAGTGCATTTTGCTCGTCAAATTGCCGCTCTCGTTTTAAGAGAGAAAGCTGCGTTAAACACGCTTTTTTATTAAC
AGGAATCGTAGTATCCGCTT

Downstream 100 bases:

>100_bases
TTCACTGGCAAATATCACCTAAAAAAATACCCGCTATCAGCGGGTATTTTTTTGTTATTTATTAGGCGATTAAAAACCTA
ATAGAATAACAAGATCAATC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSMLRTTALLLTLVFPSLSALATEYPLPAAQSRLIGENQYYTVPEGKHTLEDIAAKYQLGLSNLLEANPGVDPFLPKPGS
QLLIPLQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAA
KGEILPAVWPAGPDNPMGLYALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHEDIEHLFKNVPVGTRVQFVNQPIKATEE
PDGKRYLAVHQPLSRTVAEFESNEPVAISLPRDIAKFIAKADTNSSVIKKLLDERTGVPMRINQ

Sequences:

>Translated_304_residues
MSMLRTTALLLTLVFPSLSALATEYPLPAAQSRLIGENQYYTVPEGKHTLEDIAAKYQLGLSNLLEANPGVDPFLPKPGS
QLLIPLQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAA
KGEILPAVWPAGPDNPMGLYALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHEDIEHLFKNVPVGTRVQFVNQPIKATEE
PDGKRYLAVHQPLSRTVAEFESNEPVAISLPRDIAKFIAKADTNSSVIKKLLDERTGVPMRINQ
>Mature_303_residues
SMLRTTALLLTLVFPSLSALATEYPLPAAQSRLIGENQYYTVPEGKHTLEDIAAKYQLGLSNLLEANPGVDPFLPKPGSQ
LLIPLQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAAK
GEILPAVWPAGPDNPMGLYALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHEDIEHLFKNVPVGTRVQFVNQPIKATEEP
DGKRYLAVHQPLSRTVAEFESNEPVAISLPRDIAKFIAKADTNSSVIKKLLDERTGVPMRINQ

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=286, Percent_Identity=63.986013986014, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1788299, Length=303, Percent_Identity=59.0759075907591, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI1787356, Length=284, Percent_Identity=52.8169014084507, Blast_Score=296, Evalue=9e-82,
Organism=Escherichia coli, GI1787968, Length=308, Percent_Identity=45.7792207792208, Blast_Score=247, Evalue=7e-67,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 33621; Mature: 33490

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMLRTTALLLTLVFPSLSALATEYPLPAAQSRLIGENQYYTVPEGKHTLEDIAAKYQLG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHC
LSNLLEANPGVDPFLPKPGSQLLIPLQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVL
HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCEEEEE
PIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAAKGEILPAVWPAGPDNPMGLY
EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCEEE
ALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHEDIEHLFKNVPVGTRVQFVNQPIKATEE
EEEECCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCC
PDGKRYLAVHQPLSRTVAEFESNEPVAISLPRDIAKFIAKADTNSSVIKKLLDERTGVPM
CCCCEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
RINQ
EECC
>Mature Secondary Structure 
SMLRTTALLLTLVFPSLSALATEYPLPAAQSRLIGENQYYTVPEGKHTLEDIAAKYQLG
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHC
LSNLLEANPGVDPFLPKPGSQLLIPLQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVL
HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCEEEEE
PIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAAKGEILPAVWPAGPDNPMGLY
EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCEEE
ALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHEDIEHLFKNVPVGTRVQFVNQPIKATEE
EEEECCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCC
PDGKRYLAVHQPLSRTVAEFESNEPVAISLPRDIAKFIAKADTNSSVIKKLLDERTGVPM
CCCCEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
RINQ
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]