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The map label for this gene is cph2 [H]

Identifier: 126174233

GI number: 126174233

Start: 2330467

End: 2331432

Strand: Direct

Name: cph2 [H]

Synonym: Sbal_2011

Alternate gene names: 126174233

Gene position: 2330467-2331432 (Clockwise)

Preceding gene: 126174229

Following gene: 126174234

Centisome position: 45.45

GC content: 43.27

Gene sequence:

>966_bases
ATGAAATTACCTAAAATACCAGATGATGAACAAGTTCGTTTAAGTCAGTTACGCGCTTTAGCCATTCTTGATACACCTTC
TGAAGAACGATTTGATTGCGTAACACGCATGGCGAAACGTTTATTTGGAGTTCCCATTGCTTTGGTGTCCTTAGTTGATG
AAAACCGACAATGGTTTAAGTCATGTTTTGGATTGGATGTTTCCGAAACTGAGCGGAGTATTTCATTCTGCGGCCATGCA
ATTCTGAACAAAAGCGCGCTAGTCATCAATGATGCAACTCTGGACGAGAGATTTTTTGATAACCCTCTGGTTATTGGAGA
ACCGTACATCCGCTTTTACGCGGGTCAACCCCTGCGCACGCTGAGCGGCCAAGGTTTAGGTACGCTCTGTATTATTGACC
AGACTCCACGAGATTTCAGCGATGAGGACATCACGATGTTAGCTAATCTTGCGGGTATGGTGGAGCGTGAAATTATGGCT
GTGCAGCTTACAATATCCGATGAACTGACAAAAATATCGAATCGCCGTGGTTTTTTAACGCTTACTCGATACTGCCTTGA
AGTATGTAAACGCGGTTCGTTTCCCGCTTCGCTTGTATTTTTTGACCTCGACAAATTTAAAGAGATCAACGATGCACATG
GTCACGCTGAAGGTGATAGAGCTCTTAAGATCTTTGCAGATGAAATGATGGGATCATTCCGCACTTCTGATATCTTTGCG
AGGCTCGGTGGCGATGAGTTCGTTGTGCTGCTAACTAATACGAGTACAGAGGGAATTCAGCAGCTAATTGTACGCTTCAA
GGCATCGTTAAGGTCGCGTTGCACCTCGGATTGCTTACCTTATTTCATAGAGTTTTCTTTTGGCTTCGTTGATTACGAAC
CACTTAAGCATGAGTCAATCGAGGATATGCTGATTGAAGCTGATAAAGCGATGTATGAGAATAAAAAAAGCAAACATAAT
GCGTAG

Upstream 100 bases:

>100_bases
AATAACGTTACGGCAACAGAAATGCGGCCTTCTTGATGATTTGCTAGCGCTTGCCGTTTAGCGAAGTGTAGATGTGGGGG
GATGTCAATTGGAGCGCAAT

Downstream 100 bases:

>100_bases
CTCATATCCTCGTTCGACTGGTAAAACATCGGCACTTCGTGGCTTGGCAGTTTTTAGATCGTGGTTTAAAACAACTGTTT
TATAAAACCATAACATAGAA

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKLPKIPDDEQVRLSQLRALAILDTPSEERFDCVTRMAKRLFGVPIALVSLVDENRQWFKSCFGLDVSETERSISFCGHA
ILNKSALVINDATLDERFFDNPLVIGEPYIRFYAGQPLRTLSGQGLGTLCIIDQTPRDFSDEDITMLANLAGMVEREIMA
VQLTISDELTKISNRRGFLTLTRYCLEVCKRGSFPASLVFFDLDKFKEINDAHGHAEGDRALKIFADEMMGSFRTSDIFA
RLGGDEFVVLLTNTSTEGIQQLIVRFKASLRSRCTSDCLPYFIEFSFGFVDYEPLKHESIEDMLIEADKAMYENKKSKHN
A

Sequences:

>Translated_321_residues
MKLPKIPDDEQVRLSQLRALAILDTPSEERFDCVTRMAKRLFGVPIALVSLVDENRQWFKSCFGLDVSETERSISFCGHA
ILNKSALVINDATLDERFFDNPLVIGEPYIRFYAGQPLRTLSGQGLGTLCIIDQTPRDFSDEDITMLANLAGMVEREIMA
VQLTISDELTKISNRRGFLTLTRYCLEVCKRGSFPASLVFFDLDKFKEINDAHGHAEGDRALKIFADEMMGSFRTSDIFA
RLGGDEFVVLLTNTSTEGIQQLIVRFKASLRSRCTSDCLPYFIEFSFGFVDYEPLKHESIEDMLIEADKAMYENKKSKHN
A
>Mature_321_residues
MKLPKIPDDEQVRLSQLRALAILDTPSEERFDCVTRMAKRLFGVPIALVSLVDENRQWFKSCFGLDVSETERSISFCGHA
ILNKSALVINDATLDERFFDNPLVIGEPYIRFYAGQPLRTLSGQGLGTLCIIDQTPRDFSDEDITMLANLAGMVEREIMA
VQLTISDELTKISNRRGFLTLTRYCLEVCKRGSFPASLVFFDLDKFKEINDAHGHAEGDRALKIFADEMMGSFRTSDIFA
RLGGDEFVVLLTNTSTEGIQQLIVRFKASLRSRCTSDCLPYFIEFSFGFVDYEPLKHESIEDMLIEADKAMYENKKSKHN
A

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=215, Percent_Identity=31.6279069767442, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=30.379746835443, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=225, Percent_Identity=28, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI145693134, Length=190, Percent_Identity=31.0526315789474, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=32.7044025157233, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082007, Length=156, Percent_Identity=30.1282051282051, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=32.5, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=30.3867403314917, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787541, Length=154, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 36363; Mature: 36363

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPKIPDDEQVRLSQLRALAILDTPSEERFDCVTRMAKRLFGVPIALVSLVDENRQWFK
CCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SCFGLDVSETERSISFCGHAILNKSALVINDATLDERFFDNPLVIGEPYIRFYAGQPLRT
HHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCEEECCCHHEEECCCCHHH
LSGQGLGTLCIIDQTPRDFSDEDITMLANLAGMVEREIMAVQLTISDELTKISNRRGFLT
HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEECHHHHHHHCCCCHHH
LTRYCLEVCKRGSFPASLVFFDLDKFKEINDAHGHAEGDRALKIFADEMMGSFRTSDIFA
HHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
RLGGDEFVVLLTNTSTEGIQQLIVRFKASLRSRCTSDCLPYFIEFSFGFVDYEPLKHESI
HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
EDMLIEADKAMYENKKSKHNA
HHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure
MKLPKIPDDEQVRLSQLRALAILDTPSEERFDCVTRMAKRLFGVPIALVSLVDENRQWFK
CCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SCFGLDVSETERSISFCGHAILNKSALVINDATLDERFFDNPLVIGEPYIRFYAGQPLRT
HHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCEEECCCHHEEECCCCHHH
LSGQGLGTLCIIDQTPRDFSDEDITMLANLAGMVEREIMAVQLTISDELTKISNRRGFLT
HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEECHHHHHHHCCCCHHH
LTRYCLEVCKRGSFPASLVFFDLDKFKEINDAHGHAEGDRALKIFADEMMGSFRTSDIFA
HHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
RLGGDEFVVLLTNTSTEGIQQLIVRFKASLRSRCTSDCLPYFIEFSFGFVDYEPLKHESI
HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
EDMLIEADKAMYENKKSKHNA
HHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]