| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485596
Identifier: 124485596
GI number: 124485596
Start: 755886
End: 756362
Strand: Reverse
Name: 124485596
Synonym: Mlab_0774
Alternate gene names: NA
Gene position: 756362-755886 (Counterclockwise)
Preceding gene: 124485597
Following gene: 124485594
Centisome position: 41.9
GC content: 48.22
Gene sequence:
>477_bases ATGAAATATATTCTGGATTCATCCTATTTTTTCGGCGATTATACGCTTGACGGAGAGCTTTTTACCACTCCCGAGGTTGT CAGCGAACTTAAGGATCTGGCATCTAAGATGCGGTTTGAGATCCTTACGGAGAAAGGACTCGTAACGACCGAGCCGGAAG CGGAACACATATTTGCAGCGACAAACGCGGCACTCAAAAGCGGGGATGCAAGAGTTCTCTCAGATACGGATATTTCGGTC ATCGCTCTCGGCCTGACACTGGATGGCACGGTGATTTCCGATGATTTTGCCGTACAAAATGTCTGCCGGCATCTGAAAAT ATCAACCAAAGGTATTCTGCAGAGAAATGCCAAGAAAAAGGTCTGGAAAAAAATATGTTCGGGATGCGGAGCAGAGATTC CGGCAGATGAGGAAGACTGTCCTATCTGCGGTTCTGCTCCGATCCGGCGCGGGACGGAAAAAGGAAAACGACGGTAA
Upstream 100 bases:
>100_bases TTATGCAGGCCGGCCTTGCCGACATTGCATCCTCGGACACGATCGAGCGTGCCTCAAGCAGGATCACGGCATCGGGTGTC ATAGCAGACGCCATACGTAA
Downstream 100 bases:
>100_bases CGAATATTTCAGATCAGCCGTCTTCTGATAAACCAGGATATTTTAGCAGCAAGGTTGTGCAGTCCCTCAGTGTATTTTCT TCTGGAATAATGGATCACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 158
Protein sequence:
>158_residues MKYILDSSYFFGDYTLDGELFTTPEVVSELKDLASKMRFEILTEKGLVTTEPEAEHIFAATNAALKSGDARVLSDTDISV IALGLTLDGTVISDDFAVQNVCRHLKISTKGILQRNAKKKVWKKICSGCGAEIPADEEDCPICGSAPIRRGTEKGKRR
Sequences:
>Translated_158_residues MKYILDSSYFFGDYTLDGELFTTPEVVSELKDLASKMRFEILTEKGLVTTEPEAEHIFAATNAALKSGDARVLSDTDISV IALGLTLDGTVISDDFAVQNVCRHLKISTKGILQRNAKKKVWKKICSGCGAEIPADEEDCPICGSAPIRRGTEKGKRR >Mature_158_residues MKYILDSSYFFGDYTLDGELFTTPEVVSELKDLASKMRFEILTEKGLVTTEPEAEHIFAATNAALKSGDARVLSDTDISV IALGLTLDGTVISDDFAVQNVCRHLKISTKGILQRNAKKKVWKKICSGCGAEIPADEEDCPICGSAPIRRGTEKGKRR
Specific function: Unknown
COG id: COG1439
COG function: function code R; Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0129 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006596 - InterPro: IPR022907 - InterPro: IPR022785 [H]
Pfam domain/function: PF08745 UPF0278 [H]
EC number: NA
Molecular weight: Translated: 17302; Mature: 17302
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYILDSSYFFGDYTLDGELFTTPEVVSELKDLASKMRFEILTEKGLVTTEPEAEHIFAA CCEEECCCEEECEEEECCCEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHH TNAALKSGDARVLSDTDISVIALGLTLDGTVISDDFAVQNVCRHLKISTKGILQRNAKKK HHHHHHCCCCEEECCCCEEEEEEEEEECCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH VWKKICSGCGAEIPADEEDCPICGSAPIRRGTEKGKRR HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKYILDSSYFFGDYTLDGELFTTPEVVSELKDLASKMRFEILTEKGLVTTEPEAEHIFAA CCEEECCCEEECEEEECCCEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHH TNAALKSGDARVLSDTDISVIALGLTLDGTVISDDFAVQNVCRHLKISTKGILQRNAKKK HHHHHHCCCCEEECCCCEEEEEEEEEECCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH VWKKICSGCGAEIPADEEDCPICGSAPIRRGTEKGKRR HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12622808 [H]