| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485524
Identifier: 124485524
GI number: 124485524
Start: 672604
End: 674301
Strand: Reverse
Name: 124485524
Synonym: Mlab_0701
Alternate gene names: NA
Gene position: 674301-672604 (Counterclockwise)
Preceding gene: 124485525
Following gene: 124485514
Centisome position: 37.36
GC content: 47.59
Gene sequence:
>1698_bases ATGATACGACATGCTTTTTCAAAGATCCTCTTTATACTGATAGTTCTTCTTTTCATCTCCGCATCCGGCTGTATTACTCC CGTTCAGGAGGGCCCGACACTCCAGCCGGTTTCCGAGGAATATTATGCCGAGATGGACGATGTCCTCGACCCGTATATTC AGACGATCGATGATCAGATGAAGCAGATAACCGCATCGGTCTGGAATGCCGCACGGGAACTCGACGGCGTGCCGGCAGAT GACCCCTCAGTATATCTGACCATAATGAAACTCAAAAGTGAGATCCCGCTTTCCTATGATGTCGAACGCATCGATAAAGA TAACGTCCTGACGATGATTACCGGGGAATCAGATAAACTTTCGCTGATCGGCGTGGAGATCATAACTAACCAGTATGCCG AAGAAGAGTTCAAAGCCGCCGGATCGCAGTGTATCATATCCAAATACACCGCATTCCAAAACGGTGAAAGCGGAATAAAG GTCAGCGCACCGATCTATGACGCAGAGGGTAATTTTGACGGGACCCTGCAGGTAATTATGGATTCAGGGTATCTCTTCTC CGGACCGGCGGAGAGACTGAGAACGGAATACGGGTACACCGTTTGGGTCACTCAGGACGACGGGAGCGTGATCTATGATG AGGATACGCGGCAAATCGGGGTCGATCTCACGAACCCGTCACTAGGGAATACACCTTCATTCACCAAAGCAGCCGCAGAG ATCCTCAAAAACGAGTCGGGAGATGTATCCTACATTTACTATTCAGCCGAATTGAACAATACTTCTCAGAGGAACGCCAT ATGGAATACAGTAGAACCCGGATATGGACAAACATGGCGGGTCGTGCTTGTCGACAATTTCCCAAAACCTGGTGAAATTG AAGAGAGCACAACCACCCCGGAAGAGATAAAAACCTTTGTAGTGAATGCCTTCGTTTATGCCAATAAAGAGGGAGAAGAG AAGGCACTTGCAGCATTCGATGATCCAAACGGGGAGTTCATTGACGGCGAGATGTATATCTTCGCCGGAGATATGAACGG CACGATATTGTCACACCCGTATCAGCCGGCCCTTGTCGGGAAGGATTCCTGGTCAGCAGAAGATTCGACCGGAGTGAAAT ATATACAGAGACAGATCGCCCGGGCACAACAGGGAGGCGGATATGTATTTTATCTGTATCCAAATCCAAACCAGAATTAC ATAACAGAATTAAAACTGTCCTATGTACTGCCCATTAACAACGAGTGGTTCCTCGGAGCAGGAATGTATGAACATAATGC CTCGTTTTCCCATACGGTCAGTATCGACTGGCAGAAACGAAATGAATTGATCAGCCAGGTAAGGACCATGCATTATCTTG CAGCAGTCGATGGTATCTCTTCTGTAACAGAAATGATGATGGATCCGGAAAGTGGATTCCAACGAGAAGGGCTCTATCCA TTTGCGGTCACGGGAAACGGCACAATTCTTGCTTTTTCCAGCGACAAATCGCTTGTTGGAACAAATCAGTTAGGTTTAAT CAACTCATACGGCATGTCGTTTGTCCGGGAGGGGATATCTCTCGGTATGTCCGGCGGAGGTCTGATGTATATGCTCACTT GGGATCAGAATTATCAAAGGGAAGTGTATGTTCTGGATTACGTCGAACCAGTGGGGAATGATACCTACTTTGCCAGTTAC ATGATCCTGGAGGATTGA
Upstream 100 bases:
>100_bases TTATCTCTCGAAACATTTCCAAGAAAAATCAGAGAGATAGTCCCACGATAAAAAGATATAAGAACTTTCCCTTTACTATT GTTCACTAAGGAATCCGATC
Downstream 100 bases:
>100_bases AGGGGGGGTGTCATATTTTTTTAAATAGGAGTTACGCGGTGTGCTCTCAATCCAATTTGGGAAGGATACGGCTAGGTGTG GAAACCTGAATTTATGTAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Cache Type 2 Domain-Containing Protein; Signal Transduction Histidine Kinase-Like
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MIRHAFSKILFILIVLLFISASGCITPVQEGPTLQPVSEEYYAEMDDVLDPYIQTIDDQMKQITASVWNAARELDGVPAD DPSVYLTIMKLKSEIPLSYDVERIDKDNVLTMITGESDKLSLIGVEIITNQYAEEEFKAAGSQCIISKYTAFQNGESGIK VSAPIYDAEGNFDGTLQVIMDSGYLFSGPAERLRTEYGYTVWVTQDDGSVIYDEDTRQIGVDLTNPSLGNTPSFTKAAAE ILKNESGDVSYIYYSAELNNTSQRNAIWNTVEPGYGQTWRVVLVDNFPKPGEIEESTTTPEEIKTFVVNAFVYANKEGEE KALAAFDDPNGEFIDGEMYIFAGDMNGTILSHPYQPALVGKDSWSAEDSTGVKYIQRQIARAQQGGGYVFYLYPNPNQNY ITELKLSYVLPINNEWFLGAGMYEHNASFSHTVSIDWQKRNELISQVRTMHYLAAVDGISSVTEMMMDPESGFQREGLYP FAVTGNGTILAFSSDKSLVGTNQLGLINSYGMSFVREGISLGMSGGGLMYMLTWDQNYQREVYVLDYVEPVGNDTYFASY MILED
Sequences:
>Translated_565_residues MIRHAFSKILFILIVLLFISASGCITPVQEGPTLQPVSEEYYAEMDDVLDPYIQTIDDQMKQITASVWNAARELDGVPAD DPSVYLTIMKLKSEIPLSYDVERIDKDNVLTMITGESDKLSLIGVEIITNQYAEEEFKAAGSQCIISKYTAFQNGESGIK VSAPIYDAEGNFDGTLQVIMDSGYLFSGPAERLRTEYGYTVWVTQDDGSVIYDEDTRQIGVDLTNPSLGNTPSFTKAAAE ILKNESGDVSYIYYSAELNNTSQRNAIWNTVEPGYGQTWRVVLVDNFPKPGEIEESTTTPEEIKTFVVNAFVYANKEGEE KALAAFDDPNGEFIDGEMYIFAGDMNGTILSHPYQPALVGKDSWSAEDSTGVKYIQRQIARAQQGGGYVFYLYPNPNQNY ITELKLSYVLPINNEWFLGAGMYEHNASFSHTVSIDWQKRNELISQVRTMHYLAAVDGISSVTEMMMDPESGFQREGLYP FAVTGNGTILAFSSDKSLVGTNQLGLINSYGMSFVREGISLGMSGGGLMYMLTWDQNYQREVYVLDYVEPVGNDTYFASY MILED >Mature_565_residues MIRHAFSKILFILIVLLFISASGCITPVQEGPTLQPVSEEYYAEMDDVLDPYIQTIDDQMKQITASVWNAARELDGVPAD DPSVYLTIMKLKSEIPLSYDVERIDKDNVLTMITGESDKLSLIGVEIITNQYAEEEFKAAGSQCIISKYTAFQNGESGIK VSAPIYDAEGNFDGTLQVIMDSGYLFSGPAERLRTEYGYTVWVTQDDGSVIYDEDTRQIGVDLTNPSLGNTPSFTKAAAE ILKNESGDVSYIYYSAELNNTSQRNAIWNTVEPGYGQTWRVVLVDNFPKPGEIEESTTTPEEIKTFVVNAFVYANKEGEE KALAAFDDPNGEFIDGEMYIFAGDMNGTILSHPYQPALVGKDSWSAEDSTGVKYIQRQIARAQQGGGYVFYLYPNPNQNY ITELKLSYVLPINNEWFLGAGMYEHNASFSHTVSIDWQKRNELISQVRTMHYLAAVDGISSVTEMMMDPESGFQREGLYP FAVTGNGTILAFSSDKSLVGTNQLGLINSYGMSFVREGISLGMSGGGLMYMLTWDQNYQREVYVLDYVEPVGNDTYFASY MILED
Specific function: Unknown
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62967; Mature: 62967
Theoretical pI: Translated: 4.03; Mature: 4.03
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01228 COF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRHAFSKILFILIVLLFISASGCITPVQEGPTLQPVSEEYYAEMDDVLDPYIQTIDDQM CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KQITASVWNAARELDGVPADDPSVYLTIMKLKSEIPLSYDVERIDKDNVLTMITGESDKL HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCEEEEEECCCCCE SLIGVEIITNQYAEEEFKAAGSQCIISKYTAFQNGESGIKVSAPIYDAEGNFDGTLQVIM EEEEEEEHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCEEEECCEEECCCCCCCEEEEEE DSGYLFSGPAERLRTEYGYTVWVTQDDGSVIYDEDTRQIGVDLTNPSLGNTPSFTKAAAE ECCEEECCCHHHHHHHCCEEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHH ILKNESGDVSYIYYSAELNNTSQRNAIWNTVEPGYGQTWRVVLVDNFPKPGEIEESTTTP HHHCCCCCEEEEEEEEECCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCH EEIKTFVVNAFVYANKEGEEKALAAFDDPNGEFIDGEMYIFAGDMNGTILSHPYQPALVG HHHHHHHEEEEEEECCCCCCCEEEEEECCCCCEECCEEEEEEECCCCCEEECCCCCEEEC KDSWSAEDSTGVKYIQRQIARAQQGGGYVFYLYPNPNQNYITELKLSYVLPINNEWFLGA CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEC GMYEHNASFSHTVSIDWQKRNELISQVRTMHYLAAVDGISSVTEMMMDPESGFQREGLYP CEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE FAVTGNGTILAFSSDKSLVGTNQLGLINSYGMSFVREGISLGMSGGGLMYMLTWDQNYQR EEEECCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC EVYVLDYVEPVGNDTYFASYMILED EEEEEEEECCCCCCEEEEEEEEEEC >Mature Secondary Structure MIRHAFSKILFILIVLLFISASGCITPVQEGPTLQPVSEEYYAEMDDVLDPYIQTIDDQM CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KQITASVWNAARELDGVPADDPSVYLTIMKLKSEIPLSYDVERIDKDNVLTMITGESDKL HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCEEEEEECCCCCE SLIGVEIITNQYAEEEFKAAGSQCIISKYTAFQNGESGIKVSAPIYDAEGNFDGTLQVIM EEEEEEEHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCEEEECCEEECCCCCCCEEEEEE DSGYLFSGPAERLRTEYGYTVWVTQDDGSVIYDEDTRQIGVDLTNPSLGNTPSFTKAAAE ECCEEECCCHHHHHHHCCEEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHH ILKNESGDVSYIYYSAELNNTSQRNAIWNTVEPGYGQTWRVVLVDNFPKPGEIEESTTTP HHHCCCCCEEEEEEEEECCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCH EEIKTFVVNAFVYANKEGEEKALAAFDDPNGEFIDGEMYIFAGDMNGTILSHPYQPALVG HHHHHHHEEEEEEECCCCCCCEEEEEECCCCCEECCEEEEEEECCCCCEEECCCCCEEEC KDSWSAEDSTGVKYIQRQIARAQQGGGYVFYLYPNPNQNYITELKLSYVLPINNEWFLGA CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEC GMYEHNASFSHTVSIDWQKRNELISQVRTMHYLAAVDGISSVTEMMMDPESGFQREGLYP CEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE FAVTGNGTILAFSSDKSLVGTNQLGLINSYGMSFVREGISLGMSGGGLMYMLTWDQNYQR EEEECCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC EVYVLDYVEPVGNDTYFASYMILED EEEEEEEECCCCCCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA