| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485514
Identifier: 124485514
GI number: 124485514
Start: 664371
End: 666065
Strand: Reverse
Name: 124485514
Synonym: Mlab_0691
Alternate gene names: NA
Gene position: 666065-664371 (Counterclockwise)
Preceding gene: 124485524
Following gene: 124485513
Centisome position: 36.9
GC content: 48.2
Gene sequence:
>1695_bases ATGATACGAAACGCGTCTTCGAAGATCCTATCCATACTGATAGTTCTTTTTTTTATATCTGCATCCGGCTGTATTACGCC AGTTCAGGAAACACCGACGCTTCAGCCGGTATCGGATGAGTACTATGCCGAGATGGACGCAGCTCTGGACACCTATATCC TAAACATCGATGAGCAGATGAAGGAGACGACTGCAGCGGTGTGGAATGCAGCAAGAGAACTAGACGGCATGCCCAAAGAT GGCCCGGAGGTAGATCTCGCTTTACTGAAACTCAAAAGTGAGATCCCCCTCTCTTACGAAGTCGGCCGCGTGGACAAGGA CAACATTCTTACAGCCATTACGGGAGAACAGAATAGTCAGCAACTCGTTGGAACAGAGATCATAACTACGCCATACACCG AAGAAGAGCTAAAAGCTGTCGGATCTGCCTGTGTAGTATCCAACTTTGTCACATTCCAAAATGGAGACAGAGGAATAAAG GTTATTGCACCAGTCTACGACGCAGAAGGCAATTATGACGGGACCATACAGGTATCTCTCAACATAGAGTCTCTTTTCTC CGGACCGGCGGACGAACTGAGGACAAAATACGGATATACCGTCTGGGCCGCTCAGGAAAACGGACAAATAATATATGACG AAGAAATGACCAAAATCGGATCCGACCTCACGAACCCTTCATCGGCGTACACACCATCATTCACTGCAGCAACTAAAGAT ATTCTCACAAACGAATCAGGACACACCTCCTACATTTTCTATTCAGCAGCATGGAACAATATTTCCCAGACAAATGCCGT ATGGAGCACACTTGAACCAGGATACGGACAGACATGGAAAATTGTACTTGTCGACACAGTCCCGCCACTCCACGAACTTA TGGAGCCGATAGTTACTCCAGACGAACTGAAGGTGTTCGTTATGAAGGCCTATATCTATGCCCTGACCGAAGGTAAAACA AAAGCCCTCGCCGCATTCAATGATCCAAAGGGGGATTTTATTGACGGAGAGCTGTATATCTTTGCAGGAGGTATGGACGG GACCGTGTTGTCGCTTCCCTATCAGCCGGCACTTATCGGAGAAAATTCCTGGTTTGCAGAGGATCCTGCCGGCGTAAAAT ATGTACAGAGAGTGATCGCACGGGCAGAGCAGGGCGGAGGGTATGTTCTGTACCTGTATCCAAATCCAAGTGTCGGTTAC TCTACCGAATTAAAGCTCTCCTATGTGATCCCGGTAGACAACGAATGGTACCTTGGTGCTGGTCTGTATGAACATAATGC TCCGTTTTCCCATACGACCAATGTCGACTGGAAGATGCGAAACGAACTTATCAAGCAGGTTCGAACCATGAAGTATCTTG CAGCCGTCGAGGGTATTCCTGCCGTTACCGACATGATGATGGATCCAAACAGTTCATTCCAGCGGGATGGTCTGTATCCG TTTGCGATCTCTGGAAACGGTACTATTCTTGCCTTTTCCAATGACCCGGCGATTGTCGGGACCAATCAGCTCGGCAGTCT CAACAGTTACGGAATGTCGTTTGTCAGGGAAGGAATATCCCTGGGTCAGGAAGGAGGCGGTCTGATGTATACGCTTGCCT GGGACGCGGAAAAACAAAAAGAGGTGTTTGTTCTGGATTATGTGGAGCCGGCAGGGAACGACACCTACTTTGCCAGTTAT ATGATCCTGGAGTGA
Upstream 100 bases:
>100_bases ATGTTTTATGATTCTCGAATGAGAAAAAACTGAAAGTAATTCCCACGATAAAAAGATATAAGAACTTTCCCTTTCCTATT GTTCACTAAGGAATCCGATC
Downstream 100 bases:
>100_bases GTGGAGGCGGAAAATGATCAAATCTTTTAGAAAAACGAGGACTGATGCTCCATACGGAAAAAGACGGAAACTCTTCAAAG AGAGGGGTCATCATCAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Cache Type 2 Domain-Containing Protein; Signal Transduction Histidine Kinase-Like
Number of amino acids: Translated: 564; Mature: 564
Protein sequence:
>564_residues MIRNASSKILSILIVLFFISASGCITPVQETPTLQPVSDEYYAEMDAALDTYILNIDEQMKETTAAVWNAARELDGMPKD GPEVDLALLKLKSEIPLSYEVGRVDKDNILTAITGEQNSQQLVGTEIITTPYTEEELKAVGSACVVSNFVTFQNGDRGIK VIAPVYDAEGNYDGTIQVSLNIESLFSGPADELRTKYGYTVWAAQENGQIIYDEEMTKIGSDLTNPSSAYTPSFTAATKD ILTNESGHTSYIFYSAAWNNISQTNAVWSTLEPGYGQTWKIVLVDTVPPLHELMEPIVTPDELKVFVMKAYIYALTEGKT KALAAFNDPKGDFIDGELYIFAGGMDGTVLSLPYQPALIGENSWFAEDPAGVKYVQRVIARAEQGGGYVLYLYPNPSVGY STELKLSYVIPVDNEWYLGAGLYEHNAPFSHTTNVDWKMRNELIKQVRTMKYLAAVEGIPAVTDMMMDPNSSFQRDGLYP FAISGNGTILAFSNDPAIVGTNQLGSLNSYGMSFVREGISLGQEGGGLMYTLAWDAEKQKEVFVLDYVEPAGNDTYFASY MILE
Sequences:
>Translated_564_residues MIRNASSKILSILIVLFFISASGCITPVQETPTLQPVSDEYYAEMDAALDTYILNIDEQMKETTAAVWNAARELDGMPKD GPEVDLALLKLKSEIPLSYEVGRVDKDNILTAITGEQNSQQLVGTEIITTPYTEEELKAVGSACVVSNFVTFQNGDRGIK VIAPVYDAEGNYDGTIQVSLNIESLFSGPADELRTKYGYTVWAAQENGQIIYDEEMTKIGSDLTNPSSAYTPSFTAATKD ILTNESGHTSYIFYSAAWNNISQTNAVWSTLEPGYGQTWKIVLVDTVPPLHELMEPIVTPDELKVFVMKAYIYALTEGKT KALAAFNDPKGDFIDGELYIFAGGMDGTVLSLPYQPALIGENSWFAEDPAGVKYVQRVIARAEQGGGYVLYLYPNPSVGY STELKLSYVIPVDNEWYLGAGLYEHNAPFSHTTNVDWKMRNELIKQVRTMKYLAAVEGIPAVTDMMMDPNSSFQRDGLYP FAISGNGTILAFSNDPAIVGTNQLGSLNSYGMSFVREGISLGQEGGGLMYTLAWDAEKQKEVFVLDYVEPAGNDTYFASY MILE >Mature_564_residues MIRNASSKILSILIVLFFISASGCITPVQETPTLQPVSDEYYAEMDAALDTYILNIDEQMKETTAAVWNAARELDGMPKD GPEVDLALLKLKSEIPLSYEVGRVDKDNILTAITGEQNSQQLVGTEIITTPYTEEELKAVGSACVVSNFVTFQNGDRGIK VIAPVYDAEGNYDGTIQVSLNIESLFSGPADELRTKYGYTVWAAQENGQIIYDEEMTKIGSDLTNPSSAYTPSFTAATKD ILTNESGHTSYIFYSAAWNNISQTNAVWSTLEPGYGQTWKIVLVDTVPPLHELMEPIVTPDELKVFVMKAYIYALTEGKT KALAAFNDPKGDFIDGELYIFAGGMDGTVLSLPYQPALIGENSWFAEDPAGVKYVQRVIARAEQGGGYVLYLYPNPSVGY STELKLSYVIPVDNEWYLGAGLYEHNAPFSHTTNVDWKMRNELIKQVRTMKYLAAVEGIPAVTDMMMDPNSSFQRDGLYP FAISGNGTILAFSNDPAIVGTNQLGSLNSYGMSFVREGISLGQEGGGLMYTLAWDAEKQKEVFVLDYVEPAGNDTYFASY MILE
Specific function: Unknown
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62032; Mature: 62032
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRNASSKILSILIVLFFISASGCITPVQETPTLQPVSDEYYAEMDAALDTYILNIDEQM CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCHHHH KETTAAVWNAARELDGMPKDGPEVDLALLKLKSEIPLSYEVGRVDKDNILTAITGEQNSQ HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEEEEEECCCCCC QLVGTEIITTPYTEEELKAVGSACVVSNFVTFQNGDRGIKVIAPVYDAEGNYDGTIQVSL EEECEEEEECCCCHHHHHHHCCHHHHHHEEEEECCCCCEEEEEEEECCCCCCCCEEEEEE NIESLFSGPADELRTKYGYTVWAAQENGQIIYDEEMTKIGSDLTNPSSAYTPSFTAATKD EHHHHHCCCHHHHHHHCCEEEEEECCCCCEEECHHHHHHCCCCCCCCCCCCCCHHHHHHH ILTNESGHTSYIFYSAAWNNISQTNAVWSTLEPGYGQTWKIVLVDTVPPLHELMEPIVTP HHCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHCCCH DELKVFVMKAYIYALTEGKTKALAAFNDPKGDFIDGELYIFAGGMDGTVLSLPYQPALIG HHHHHHHEEEEHEEEECCCCEEEEEECCCCCCEECCEEEEEECCCCCEEEECCCCCEEEC ENSWFAEDPAGVKYVQRVIARAEQGGGYVLYLYPNPSVGYSTELKLSYVIPVDNEWYLGA CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEC GLYEHNAPFSHTTNVDWKMRNELIKQVRTMKYLAAVEGIPAVTDMMMDPNSSFQRDGLYP CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEE FAISGNGTILAFSNDPAIVGTNQLGSLNSYGMSFVREGISLGQEGGGLMYTLAWDAEKQK EEECCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC EVFVLDYVEPAGNDTYFASYMILE CEEEEEEECCCCCCEEEEEEEEEC >Mature Secondary Structure MIRNASSKILSILIVLFFISASGCITPVQETPTLQPVSDEYYAEMDAALDTYILNIDEQM CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCHHHH KETTAAVWNAARELDGMPKDGPEVDLALLKLKSEIPLSYEVGRVDKDNILTAITGEQNSQ HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEEEEEECCCCCC QLVGTEIITTPYTEEELKAVGSACVVSNFVTFQNGDRGIKVIAPVYDAEGNYDGTIQVSL EEECEEEEECCCCHHHHHHHCCHHHHHHEEEEECCCCCEEEEEEEECCCCCCCCEEEEEE NIESLFSGPADELRTKYGYTVWAAQENGQIIYDEEMTKIGSDLTNPSSAYTPSFTAATKD EHHHHHCCCHHHHHHHCCEEEEEECCCCCEEECHHHHHHCCCCCCCCCCCCCCHHHHHHH ILTNESGHTSYIFYSAAWNNISQTNAVWSTLEPGYGQTWKIVLVDTVPPLHELMEPIVTP HHCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHCCCH DELKVFVMKAYIYALTEGKTKALAAFNDPKGDFIDGELYIFAGGMDGTVLSLPYQPALIG HHHHHHHEEEEHEEEECCCCEEEEEECCCCCCEECCEEEEEECCCCCEEEECCCCCEEEC ENSWFAEDPAGVKYVQRVIARAEQGGGYVLYLYPNPSVGYSTELKLSYVIPVDNEWYLGA CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEC GLYEHNAPFSHTTNVDWKMRNELIKQVRTMKYLAAVEGIPAVTDMMMDPNSSFQRDGLYP CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEE FAISGNGTILAFSNDPAIVGTNQLGSLNSYGMSFVREGISLGQEGGGLMYTLAWDAEKQK EEECCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC EVFVLDYVEPAGNDTYFASYMILE CEEEEEEECCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA