Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is 124265674

Identifier: 124265674

GI number: 124265674

Start: 522870

End: 523700

Strand: Direct

Name: 124265674

Synonym: Mpe_A0481

Alternate gene names: NA

Gene position: 522870-523700 (Clockwise)

Preceding gene: 124265673

Following gene: 124265680

Centisome position: 12.93

GC content: 72.92

Gene sequence:

>831_bases
GTGATCTCCCGTCGCCGGTTGCTGGGTGCCGCCGCGGCACTGGCGCCGCTGTCCGCGCCGCTCCGTGCCGAGGGCAGCGC
GCTGGAACGCGTGCGGCGCAGCGGGAGGCTGGTGGTGGCGGTCTACCAGGACATGCCGCCGTTCAACCTGAACGGTCAGG
GCGTCGATGTCGATCTGGCCGCGGTGCTGGCCGACAGCGTGGGCGTGCCGCTCAGCCTGTTGCCGATCCCGGCCGGCGAG
AGCGTCGGCGACGACCTGCGCAACGCCGTCTGGCGCGGCCACTACCTCGGCTGGGGTCCGGCCGACGTGATGCTGCATGT
GCCGATGGACCGCCCGCTGATCGAGGCCAATCCGCAGGTGGAGGTGTTCGGCGCCTACTACCGCGAGACGGTCATGCTGG
CCTGGGACAGCGAGCGCGGTCCGACGCCCGAGACCATCGAGGCCCTGCGCGGGCAGAAGATCGCGGTGGCGGGCGTGTCC
CTGCCGGGCTACCTGCTGGCCAGCGCCGACTCCGGCGCCCTCCGCGACACGCTCAGCACCCAGCACGCCGACGGCGTGGC
AGCGGCGAAGACCCTGCTCTCCGGCGAGGTGGTGGCGGCCGCCGGCCTGGCCTCCGAACTGGAAGCGACGCTCGCCGGCC
AGCCGCGCTACAAGATCGTGCCGCTGCCGCCGATCCCGCGAGCGCCGCGCAACGGCTGGGTGGTCGGCTGTGCCGTGAAG
CGCGGCGCGACCGACCTGGCGCAGGTGATGCAGCGCCGCCTGATCGACCTCAACAACGGCACAGGCCTGCGCGATCTCTT
CCGGCGCCACAACGTCGTCTGGCGTGGCTGA

Upstream 100 bases:

>100_bases
GCAACGGTGCCGTCTACATGCCGCCGTTCGAGGGCGTGATGCAGCAGGAAGCGGTCTGGGCCATCAAGAGCTACCTCGAA
ACCCGCCGCGAGAAGCCGCT

Downstream 100 bases:

>100_bases
TCGCCGCCGACCGGCCTCGGCGCCGGTCAATAGCTGCGGCCCTTGCGGTATTGCGCATGGGCGCGCCGCGCCAGCGGGCT
GACGGCGGCGATCGCCGCCT

Product: periplasmic binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLAAVLADSVGVPLSLLPIPAGE
SVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQVEVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVS
LPGYLLASADSGALRDTLSTQHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK
RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG

Sequences:

>Translated_276_residues
MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLAAVLADSVGVPLSLLPIPAGE
SVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQVEVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVS
LPGYLLASADSGALRDTLSTQHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK
RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG
>Mature_276_residues
MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLAAVLADSVGVPLSLLPIPAGE
SVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQVEVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVS
LPGYLLASADSGALRDTLSTQHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK
RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG

Specific function: Unknown

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29394; Mature: 29394

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLA
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH
AVLADSVGVPLSLLPIPAGESVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQV
HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCEECCCCCE
EVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVSLPGYLLASADSGALRDTLST
EEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCHHHHHHHH
QHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK
HCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEC
RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG
CCCHHHHHHHHHHHEECCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLA
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH
AVLADSVGVPLSLLPIPAGESVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQV
HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCEECCCCCE
EVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVSLPGYLLASADSGALRDTLST
EEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCHHHHHHHH
QHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK
HCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEC
RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG
CCCHHHHHHHHHHHEECCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA