Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is ampH [C]

Identifier: 124265587

GI number: 124265587

Start: 426436

End: 427629

Strand: Direct

Name: ampH [C]

Synonym: Mpe_A0394

Alternate gene names: 124265587

Gene position: 426436-427629 (Clockwise)

Preceding gene: 124265586

Following gene: 124265588

Centisome position: 10.54

GC content: 70.52

Gene sequence:

>1194_bases
ATGAACAAAGACAGGCTGGGCAGCGCGCTCGACGCGCTGCTGGATCGCAGCGTGCTGCAACCAGGCGGCGTGCCCGGCGT
GGTGGCCATGGCCACCGACCGCAAGGCCGACGTCTACCGCGGCGCGGCGGGCGTGCTGCAGCTGGGCCAGGACGCTCCGA
TGTCGACCGACAGCGTGTTCGCCATCTTCTCCACCACCAAGCCGCTGACCGCCACGCTGGTGATGCAGCTGGTGGAGGAG
GGCGAGCTCGCGCTCGACGACGAGGCCGGCCGCTACGCGCCCGAGATCGACGAGCTGCAGGTGCTCGACGGCTTCGATGC
GGCCGGGCAGCCGCGGCTGCGCGCGCCCAGGCGCCGGATCACGGTGCGCGACCTGATGCTGCACACCTCGGGCCTGTGCT
ACGAGTTCTTCAGCGCCGACGACCTGAAGTTCCGCGCCGCGCGCGGCATTCCCACCGTGGTGTCGTGCAGCCTCGACTCG
ATCCGCACCGTGCTGCTGCACGACCCCGGCGAGGCCTGGACCTACGGCGTCAACATCGACTGGATCGGCCGCATCGTGGA
AAAGCTGCGCGGCGACCGGCTGGGCCACGTGATGCGCGAGCGGCTGTTCGACCCGCTGGGCATGGAGGAGATCGGCTTCG
GGATGTCGGATGACATGCAGCCGCGCCGCGCCGTCATCCATGCGCGTGCCGACGATGGCACGCTCACGCCGCAGCCCGAC
CTGAAACTGCCCGACCCGCCGCCGATGGACATGGGCGGCCAGGGCCTGTACGCGACGGTGGGCGAGTACATGAAGTTCAT
CCGCATGCTGCTCAACGACGGCAGCGGGCCGTTCGGTCGGGTGCTGAGGCCGGAGACGGTGGACGCGCTGGCGCAGGACG
GGCTGAAGGCCCTGGGCCTGTCGGCGGGTGGGTGGACCACGTCGATCCCCTCGCTGGCCAACACCGGCGAGTTCCTGCCC
GGCACCGACAAGGGCTGGGCCTACAGCTTCATGACCAACCGGGAGCGCGCGCCCACCGGCCGCAGCGCCGGTTCGCTGAT
GTGGGCGGGCCTGGCCAACTGCTTCTTCTGGGCCGACCGCCGGGCCGGCATCGGCGGCTACTGGGCCACGCAGATCCTGC
CGCTGATGGACGCCGCGTCCTACCCGGGCTTCGTGGAGTTCGAGTCCACCGTCTACCAGCACCGCAGCGCATGA

Upstream 100 bases:

>100_bases
CTATGCCGGCGGCGTGGGCAACTATCACCGGCAGTGCGACGAGCAGGCGGCCATGGGCTACCCCGGCTTCGCCATGCGCT
GAGCGCCAGGGAGACCCGCC

Downstream 100 bases:

>100_bases
CCGACTACGCCACCTTCTACCGCCGCTCGATCGAAGACCCGAAGGGTTTCTGGGCCGAGCAGGCCGAGCTGATCGACTGG
CACCGCCCGTTCGACGAAGT

Product: putative 1,4-butanediol diacrylate esterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MNKDRLGSALDALLDRSVLQPGGVPGVVAMATDRKADVYRGAAGVLQLGQDAPMSTDSVFAIFSTTKPLTATLVMQLVEE
GELALDDEAGRYAPEIDELQVLDGFDAAGQPRLRAPRRRITVRDLMLHTSGLCYEFFSADDLKFRAARGIPTVVSCSLDS
IRTVLLHDPGEAWTYGVNIDWIGRIVEKLRGDRLGHVMRERLFDPLGMEEIGFGMSDDMQPRRAVIHARADDGTLTPQPD
LKLPDPPPMDMGGQGLYATVGEYMKFIRMLLNDGSGPFGRVLRPETVDALAQDGLKALGLSAGGWTTSIPSLANTGEFLP
GTDKGWAYSFMTNRERAPTGRSAGSLMWAGLANCFFWADRRAGIGGYWATQILPLMDAASYPGFVEFESTVYQHRSA

Sequences:

>Translated_397_residues
MNKDRLGSALDALLDRSVLQPGGVPGVVAMATDRKADVYRGAAGVLQLGQDAPMSTDSVFAIFSTTKPLTATLVMQLVEE
GELALDDEAGRYAPEIDELQVLDGFDAAGQPRLRAPRRRITVRDLMLHTSGLCYEFFSADDLKFRAARGIPTVVSCSLDS
IRTVLLHDPGEAWTYGVNIDWIGRIVEKLRGDRLGHVMRERLFDPLGMEEIGFGMSDDMQPRRAVIHARADDGTLTPQPD
LKLPDPPPMDMGGQGLYATVGEYMKFIRMLLNDGSGPFGRVLRPETVDALAQDGLKALGLSAGGWTTSIPSLANTGEFLP
GTDKGWAYSFMTNRERAPTGRSAGSLMWAGLANCFFWADRRAGIGGYWATQILPLMDAASYPGFVEFESTVYQHRSA
>Mature_397_residues
MNKDRLGSALDALLDRSVLQPGGVPGVVAMATDRKADVYRGAAGVLQLGQDAPMSTDSVFAIFSTTKPLTATLVMQLVEE
GELALDDEAGRYAPEIDELQVLDGFDAAGQPRLRAPRRRITVRDLMLHTSGLCYEFFSADDLKFRAARGIPTVVSCSLDS
IRTVLLHDPGEAWTYGVNIDWIGRIVEKLRGDRLGHVMRERLFDPLGMEEIGFGMSDDMQPRRAVIHARADDGTLTPQPD
LKLPDPPPMDMGGQGLYATVGEYMKFIRMLLNDGSGPFGRVLRPETVDALAQDGLKALGLSAGGWTTSIPSLANTGEFLP
GTDKGWAYSFMTNRERAPTGRSAGSLMWAGLANCFFWADRRAGIGGYWATQILPLMDAASYPGFVEFESTVYQHRSA

Specific function: Binds Penicillin And Contributes To The Normal Morphology Of Escherichia Coli. [C]

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI115533026, Length=237, Percent_Identity=27.0042194092827, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 43254; Mature: 43254

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKDRLGSALDALLDRSVLQPGGVPGVVAMATDRKADVYRGAAGVLQLGQDAPMSTDSVF
CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCHHHHHCCCCCCCCCCCEE
AIFSTTKPLTATLVMQLVEEGELALDDEAGRYAPEIDELQVLDGFDAAGQPRLRAPRRRI
EEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCHHEEEECCCCCCCCCCCCCCHHHH
TVRDLMLHTSGLCYEFFSADDLKFRAARGIPTVVSCSLDSIRTVLLHDPGEAWTYGVNID
HHHHHHHHHCCCEEECCCCCCCEEEHHCCCCCEEECCHHHHEEEEEECCCCCEEEECCHH
WIGRIVEKLRGDRLGHVMRERLFDPLGMEEIGFGMSDDMQPRRAVIHARADDGTLTPQPD
HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCC
LKLPDPPPMDMGGQGLYATVGEYMKFIRMLLNDGSGPFGRVLRPETVDALAQDGLKALGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHCC
SAGGWTTSIPSLANTGEFLPGTDKGWAYSFMTNRERAPTGRSAGSLMWAGLANCFFWADR
CCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
RAGIGGYWATQILPLMDAASYPGFVEFESTVYQHRSA
CCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC
>Mature Secondary Structure
MNKDRLGSALDALLDRSVLQPGGVPGVVAMATDRKADVYRGAAGVLQLGQDAPMSTDSVF
CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCHHHHHCCCCCCCCCCCEE
AIFSTTKPLTATLVMQLVEEGELALDDEAGRYAPEIDELQVLDGFDAAGQPRLRAPRRRI
EEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCHHEEEECCCCCCCCCCCCCCHHHH
TVRDLMLHTSGLCYEFFSADDLKFRAARGIPTVVSCSLDSIRTVLLHDPGEAWTYGVNID
HHHHHHHHHCCCEEECCCCCCCEEEHHCCCCCEEECCHHHHEEEEEECCCCCEEEECCHH
WIGRIVEKLRGDRLGHVMRERLFDPLGMEEIGFGMSDDMQPRRAVIHARADDGTLTPQPD
HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCC
LKLPDPPPMDMGGQGLYATVGEYMKFIRMLLNDGSGPFGRVLRPETVDALAQDGLKALGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHCC
SAGGWTTSIPSLANTGEFLPGTDKGWAYSFMTNRERAPTGRSAGSLMWAGLANCFFWADR
CCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
RAGIGGYWATQILPLMDAASYPGFVEFESTVYQHRSA
CCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]