Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is exaA [H]
Identifier: 124265534
GI number: 124265534
Start: 374684
End: 376372
Strand: Direct
Name: exaA [H]
Synonym: Mpe_A0341
Alternate gene names: 124265534
Gene position: 374684-376372 (Clockwise)
Preceding gene: 124265532
Following gene: 124265535
Centisome position: 9.26
GC content: 67.97
Gene sequence:
>1689_bases ATGAAGCGGGATTTCGCGAGGGCCGTGCTCGGCGTGGCCCTGGCATGTCTGGCGCCCCTGGCGCTGGCGCAGACGATCGA CGACCTCAAGCGCGACGCGACGACGCCCGGCGACGTGACGACCTACGGCATGGGCTGGGGGCAGCAGCGCTACTCGGCGC TGGCCAAGATCAACAAGACCACCGTCAAGCGCCTGGTGCCGGCCTGGAACCTTAGCCTCGACAACTCCGCGAACGCCTCG ACGCAGCCGCTGCTGATCGGCGGCGTGATGTACGTGTCGACGCACAACGCCACGGTGGCGATCGACGCCGAGAGCGGTCG CCAGAAGTGGAAGGTCGCCATCGACCTGCCGGCCGACGTGAACGGCTACCTCTGCTGCGGCATCCAGAGCCGCGGCATGG CCGCGCTCGATGGCGTGCTCTACCGCACCACCATCGATGCCCACGTGCTGGCCATCGACATGGCCAGCGGGAAGACGCTG TGGAAGCAGAAGGCGGCCGACTACAAGCAGGGCTACAGCATGACCCACGCGCCGCTGGTCGCCGGCGGCGTGCTGATCAC CGGCATCTCCGGCGGCGAGTACGGCACGCGTGGCTTCCTCGATGGCTGGGACCTGAAGACCGGCGAGAAGAAGTGGCGCA CCTGGACCGTGCCCGCTCCCGGCGAGCCCGGCTCGGAGACCTGGAACGCCGACCGCCACGACAAGGGCGGTGCGCCCACC TGGCTGACCGGCACCTACGACCCGGAGCTCAACCTCGTCTACTGGGGCACCGGCAACGGCGGGCCGTGGAACCCGGCGTG GCGCGGCAAGGATTCGCTCTACATCTGCTCCATCCTCGCGCTCGACCCGGCCACCGGCAAGATCGTCTGGCACTATCAGA CCTCGCCCGGCGACCCCTACGACTACGACGCCACCAACGAGCTGGTGCTGGGCGAACTGCCGGTGAACGGCGCCGCCCGC AAGGTGCTGATGCAGGCCAACCGCAACGGCTACTTCTACGTGCTCGACCGCAGCAACGGCAAGCTGCTATCGGCCACGCA GTTCGCGCAGAAGGTCAACTGGGCGAGCGGCATCGACATGAAGACCGGCCGCCCCATCGACACCGAGATGACGAAGGCAG TGCGGTCCAATGTCGAGAGCAAGGACTTCATCGAGGCCTGGCCCAGTGCCTTCGGTGCGAAGAACTGGATGCCGATGAGC TTCGACCCGCTGAAGAAGCGCGTCTACCTGAACACGCTCAACTTCGGCATGAAGGTCAAGTACGGCACCCCGGCCTACCG CCAGGGGGCCTGGTACCTGGGGCTCGAACTCGGGGGGTGGGTCGATCCGGACGGAGGCATGCGTGGCGCGCTGGTCGCCT GGGATCCCACCACCGGCAGGAAGCTGTGGGAGAGCCCGACCGCCGCGCCGTACTGGAGCGGCGTGCTCTCCACCGCTGGC GGGCTGGTGTTCACCGGCGCGCAGACCGGCGAGTTCATGGCCTTCGACGCCGACACCGGCACGAAGCTGTGGCAGTTCCA GACCGGCTCGGGCATCTCCGGCCTGCCGATCACCTGGGAACTCAAGGGCCAGCAGTACGTCACCGTGACCAGCGGCGCCG CCACCGTGTACGGCTTCCTCGGCGGTGATGCCAAGCTGGCGCAGGTGCCGGCGGGCTCGTCGGTGTGGACCTTCAGGCTG ATCGACTGA
Upstream 100 bases:
>100_bases GAAACTACTTGATTGGGCTGCCTGGGAGGCAAAACCTATCGTTCGCCCTGCATTCTGAGGCTGCGGCATGTCGTCGGGCC GTCGCAATGGGAGACGAAGG
Downstream 100 bases:
>100_bases TGCCGGCCGCGATGACCCGCGCCCGTGCGGCCGTGTTCGCCGCGCTGCTGGCGGCCGTTCTGCTGCCGGGGCCGGTGGCC CGAGCGCAGGCGCCCGAAGG
Product: putative quinoprotein ethanol dehydrogenase
Products: NA
Alternate protein names: QEDH [H]
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MKRDFARAVLGVALACLAPLALAQTIDDLKRDATTPGDVTTYGMGWGQQRYSALAKINKTTVKRLVPAWNLSLDNSANAS TQPLLIGGVMYVSTHNATVAIDAESGRQKWKVAIDLPADVNGYLCCGIQSRGMAALDGVLYRTTIDAHVLAIDMASGKTL WKQKAADYKQGYSMTHAPLVAGGVLITGISGGEYGTRGFLDGWDLKTGEKKWRTWTVPAPGEPGSETWNADRHDKGGAPT WLTGTYDPELNLVYWGTGNGGPWNPAWRGKDSLYICSILALDPATGKIVWHYQTSPGDPYDYDATNELVLGELPVNGAAR KVLMQANRNGYFYVLDRSNGKLLSATQFAQKVNWASGIDMKTGRPIDTEMTKAVRSNVESKDFIEAWPSAFGAKNWMPMS FDPLKKRVYLNTLNFGMKVKYGTPAYRQGAWYLGLELGGWVDPDGGMRGALVAWDPTTGRKLWESPTAAPYWSGVLSTAG GLVFTGAQTGEFMAFDADTGTKLWQFQTGSGISGLPITWELKGQQYVTVTSGAATVYGFLGGDAKLAQVPAGSSVWTFRL ID
Sequences:
>Translated_562_residues MKRDFARAVLGVALACLAPLALAQTIDDLKRDATTPGDVTTYGMGWGQQRYSALAKINKTTVKRLVPAWNLSLDNSANAS TQPLLIGGVMYVSTHNATVAIDAESGRQKWKVAIDLPADVNGYLCCGIQSRGMAALDGVLYRTTIDAHVLAIDMASGKTL WKQKAADYKQGYSMTHAPLVAGGVLITGISGGEYGTRGFLDGWDLKTGEKKWRTWTVPAPGEPGSETWNADRHDKGGAPT WLTGTYDPELNLVYWGTGNGGPWNPAWRGKDSLYICSILALDPATGKIVWHYQTSPGDPYDYDATNELVLGELPVNGAAR KVLMQANRNGYFYVLDRSNGKLLSATQFAQKVNWASGIDMKTGRPIDTEMTKAVRSNVESKDFIEAWPSAFGAKNWMPMS FDPLKKRVYLNTLNFGMKVKYGTPAYRQGAWYLGLELGGWVDPDGGMRGALVAWDPTTGRKLWESPTAAPYWSGVLSTAG GLVFTGAQTGEFMAFDADTGTKLWQFQTGSGISGLPITWELKGQQYVTVTSGAATVYGFLGGDAKLAQVPAGSSVWTFRL ID >Mature_562_residues MKRDFARAVLGVALACLAPLALAQTIDDLKRDATTPGDVTTYGMGWGQQRYSALAKINKTTVKRLVPAWNLSLDNSANAS TQPLLIGGVMYVSTHNATVAIDAESGRQKWKVAIDLPADVNGYLCCGIQSRGMAALDGVLYRTTIDAHVLAIDMASGKTL WKQKAADYKQGYSMTHAPLVAGGVLITGISGGEYGTRGFLDGWDLKTGEKKWRTWTVPAPGEPGSETWNADRHDKGGAPT WLTGTYDPELNLVYWGTGNGGPWNPAWRGKDSLYICSILALDPATGKIVWHYQTSPGDPYDYDATNELVLGELPVNGAAR KVLMQANRNGYFYVLDRSNGKLLSATQFAQKVNWASGIDMKTGRPIDTEMTKAVRSNVESKDFIEAWPSAFGAKNWMPMS FDPLKKRVYLNTLNFGMKVKYGTPAYRQGAWYLGLELGGWVDPDGGMRGALVAWDPTTGRKLWESPTAAPYWSGVLSTAG GLVFTGAQTGEFMAFDADTGTKLWQFQTGSGISGLPITWELKGQQYVTVTSGAATVYGFLGGDAKLAQVPAGSSVWTFRL ID
Specific function: Catalyzes the oxidation of primary alcohols except for methanol that is a very poor substrate [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=637, Percent_Identity=24.0188383045526, Blast_Score=129, Evalue=5e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.2.8 [H]
Molecular weight: Translated: 60859; Mature: 60859
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRDFARAVLGVALACLAPLALAQTIDDLKRDATTPGDVTTYGMGWGQQRYSALAKINKT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH TVKRLVPAWNLSLDNSANASTQPLLIGGVMYVSTHNATVAIDAESGRQKWKVAIDLPADV HHHHHCCEECEECCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCEEEEEEECCCCC NGYLCCGIQSRGMAALDGVLYRTTIDAHVLAIDMASGKTLWKQKAADYKQGYSMTHAPLV CCEEEECCCCCCCHHHCCEEEEEEECEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEE AGGVLITGISGGEYGTRGFLDGWDLKTGEKKWRTWTVPAPGEPGSETWNADRHDKGGAPT ECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE WLTGTYDPELNLVYWGTGNGGPWNPAWRGKDSLYICSILALDPATGKIVWHYQTSPGDPY EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC DYDATNELVLGELPVNGAARKVLMQANRNGYFYVLDRSNGKLLSATQFAQKVNWASGIDM CCCCCCCEEEEECCCCHHHHHHHEEECCCCEEEEEECCCCCEEHHHHHHHHCCCCCCCCC KTGRPIDTEMTKAVRSNVESKDFIEAWPSAFGAKNWMPMSFDPLKKRVYLNTLNFGMKVK CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEEECCCEEEE YGTPAYRQGAWYLGLELGGWVDPDGGMRGALVAWDPTTGRKLWESPTAAPYWSGVLSTAG ECCCCHHCCCEEEEEEECCEECCCCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHCC GLVFTGAQTGEFMAFDADTGTKLWQFQTGSGISGLPITWELKGQQYVTVTSGAATVYGFL CEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEEE GGDAKLAQVPAGSSVWTFRLID CCCCEEEECCCCCCEEEEEEEC >Mature Secondary Structure MKRDFARAVLGVALACLAPLALAQTIDDLKRDATTPGDVTTYGMGWGQQRYSALAKINKT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH TVKRLVPAWNLSLDNSANASTQPLLIGGVMYVSTHNATVAIDAESGRQKWKVAIDLPADV HHHHHCCEECEECCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCEEEEEEECCCCC NGYLCCGIQSRGMAALDGVLYRTTIDAHVLAIDMASGKTLWKQKAADYKQGYSMTHAPLV CCEEEECCCCCCCHHHCCEEEEEEECEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEE AGGVLITGISGGEYGTRGFLDGWDLKTGEKKWRTWTVPAPGEPGSETWNADRHDKGGAPT ECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE WLTGTYDPELNLVYWGTGNGGPWNPAWRGKDSLYICSILALDPATGKIVWHYQTSPGDPY EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC DYDATNELVLGELPVNGAARKVLMQANRNGYFYVLDRSNGKLLSATQFAQKVNWASGIDM CCCCCCCEEEEECCCCHHHHHHHEEECCCCEEEEEECCCCCEEHHHHHHHHCCCCCCCCC KTGRPIDTEMTKAVRSNVESKDFIEAWPSAFGAKNWMPMSFDPLKKRVYLNTLNFGMKVK CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEEECCCEEEE YGTPAYRQGAWYLGLELGGWVDPDGGMRGALVAWDPTTGRKLWESPTAAPYWSGVLSTAG ECCCCHHCCCEEEEEEECCEECCCCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHCC GLVFTGAQTGEFMAFDADTGTKLWQFQTGSGISGLPITWELKGQQYVTVTSGAATVYGFL CEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEEE GGDAKLAQVPAGSSVWTFRLID CCCCEEEECCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9826187; 10984043; 10075429; 10736230 [H]