Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is purK [H]
Identifier: 124265489
GI number: 124265489
Start: 320634
End: 321827
Strand: Direct
Name: purK [H]
Synonym: Mpe_A0296
Alternate gene names: 124265489
Gene position: 320634-321827 (Clockwise)
Preceding gene: 124265488
Following gene: 124265490
Centisome position: 7.93
GC content: 71.94
Gene sequence:
>1194_bases ATGTCGAGCCACCACAAGACCCTTCTGCCCGCGGCCGTTGCCGCCGGTGCCCAGGCCAGCACACTCGGCGTGATGGGCGG CGGCCAACTGGGCCGCATGTTCGTGCACGCCGCGCAGCGCCTGGGTTACTTCACCGCCGTGCTCGACCCGGACGTGGCGA GCCCGGCCGGCCTCGTGTCGCACGTGCATGTGCAGACCGACTACCTCGACGAGCAGGGCCTGGCGCAGATGCTGCAGCGC TGCGCCGCGATCACCACCGAGTTCGAGAACGTGCCGGCCGGCGCGCTCTACACGCTGGGGGCGCACCTGCCGGCGGCGCC GGGCGCCGAGGCGGTGGCGGTGTGCCAGGACCGCGCGCGCGAGAAGCGGCATTTCGAGCAGTGCGGCGTGCCATGTGCGC CGCATGCGCTCATCGAGACGCCCGAGCAGCTGGCCGGGGTCGATGCGGCGTTGTTGCCGGGCATCCTGAAGACCGCTCGC CTGGGCTATGACGGCAAGGGCCAGCGCCGCGTGGCGACCCGCGCCGAGCTCGCACTCGCCTGGGACGAACTCAAGCGCGC GCCCTGCGTGCTCGAGAGGCTGCTGCCGCTGGCCTTCGAGATCAGCGTGATCCTGGCCCGCAATGCTGACGGCGAGCTGG TCTCCTTGCCGGTGCAGCAGAACCTGCACCGCGACGGCATCCTGGCGGTGACGCAAGTCCCGGCGCCGAACGTCCCCGCG GGGCTGTCCGCAGCGGCGCGCGATGCGGCCGGTCGCATCGCCGAAGGTCTGGGCTACGTCGGTGTGCTGTGCGTCGAGTT CTTCGTGCTCCAGGACGGCACGCTGGTGGTCAACGAGATGGCGCCGCGGCCGCACAACTCAGGCCACTACAGCATCGATG CCTGCGACGTGTCGCAGTTCGAACTGCAGGTGCGCTGCATGACCGGGCTGCCGCTGGTCGCGCCGCGCCTGCATTCCCCG GCGGTCATGCTCAACCTGCTCGGCGACCTGTGGTTTGATGCCGACGGCCGCGAGCGCACGCCCGACTGGGCCGCCGTGCT GGCGCTGCCGGGCGCGCACCTGCACCTGTACGGCAAGAGCAGCGCCCAGCGCGGTCGCAAGATGGGTCACCTGACGCTGA CTGCCGACACGCCCGAGGCAGCGCGCGCGACCGCGCTGCGGGCGGCGGAGCGGCTCGGCCTGCCGGCGTTCTGA
Upstream 100 bases:
>100_bases ACCGAGGCAGCGCGTGCGCAAAGCGCCGCCTTGTCGAAGCACTCACCCTCCTGACGTCTTGGCCGGCCCGCGACGGTCGG TCCCGCTGAAAGCTCCGCCG
Downstream 100 bases:
>100_bases AGAACATGCCGCGGCTCGACGGTCATGCCCCCGAGGCGGTCGCCGAAGCCGCCCGGCTGCTCGCGGCCGGACACCTCGTC GCCTTTCCTACCGAAACGGT
Product: phosphoribosylaminoimidazole carboxylase ATPase subunit
Products: NA
Alternate protein names: N5-CAIR synthase; 5-(carboxyamino)imidazole ribonucleotide synthetase [H]
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MSSHHKTLLPAAVAAGAQASTLGVMGGGQLGRMFVHAAQRLGYFTAVLDPDVASPAGLVSHVHVQTDYLDEQGLAQMLQR CAAITTEFENVPAGALYTLGAHLPAAPGAEAVAVCQDRAREKRHFEQCGVPCAPHALIETPEQLAGVDAALLPGILKTAR LGYDGKGQRRVATRAELALAWDELKRAPCVLERLLPLAFEISVILARNADGELVSLPVQQNLHRDGILAVTQVPAPNVPA GLSAAARDAAGRIAEGLGYVGVLCVEFFVLQDGTLVVNEMAPRPHNSGHYSIDACDVSQFELQVRCMTGLPLVAPRLHSP AVMLNLLGDLWFDADGRERTPDWAAVLALPGAHLHLYGKSSAQRGRKMGHLTLTADTPEAARATALRAAERLGLPAF
Sequences:
>Translated_397_residues MSSHHKTLLPAAVAAGAQASTLGVMGGGQLGRMFVHAAQRLGYFTAVLDPDVASPAGLVSHVHVQTDYLDEQGLAQMLQR CAAITTEFENVPAGALYTLGAHLPAAPGAEAVAVCQDRAREKRHFEQCGVPCAPHALIETPEQLAGVDAALLPGILKTAR LGYDGKGQRRVATRAELALAWDELKRAPCVLERLLPLAFEISVILARNADGELVSLPVQQNLHRDGILAVTQVPAPNVPA GLSAAARDAAGRIAEGLGYVGVLCVEFFVLQDGTLVVNEMAPRPHNSGHYSIDACDVSQFELQVRCMTGLPLVAPRLHSP AVMLNLLGDLWFDADGRERTPDWAAVLALPGAHLHLYGKSSAQRGRKMGHLTLTADTPEAARATALRAAERLGLPAF >Mature_396_residues SSHHKTLLPAAVAAGAQASTLGVMGGGQLGRMFVHAAQRLGYFTAVLDPDVASPAGLVSHVHVQTDYLDEQGLAQMLQRC AAITTEFENVPAGALYTLGAHLPAAPGAEAVAVCQDRAREKRHFEQCGVPCAPHALIETPEQLAGVDAALLPGILKTARL GYDGKGQRRVATRAELALAWDELKRAPCVLERLLPLAFEISVILARNADGELVSLPVQQNLHRDGILAVTQVPAPNVPAG LSAAARDAAGRIAEGLGYVGVLCVEFFVLQDGTLVVNEMAPRPHNSGHYSIDACDVSQFELQVRCMTGLPLVAPRLHSPA VMLNLLGDLWFDADGRERTPDWAAVLALPGAHLHLYGKSSAQRGRKMGHLTLTADTPEAARATALRAAERLGLPAF
Specific function: Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) [H]
COG id: COG0026
COG function: function code F; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
Organism=Escherichia coli, GI1786733, Length=369, Percent_Identity=36.5853658536585, Blast_Score=171, Evalue=6e-44, Organism=Escherichia coli, GI1788155, Length=370, Percent_Identity=25.6756756756757, Blast_Score=92, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6324702, Length=374, Percent_Identity=33.4224598930481, Blast_Score=206, Evalue=7e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006115 - InterPro: IPR005875 - InterPro: IPR011761 - InterPro: IPR003135 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 [H]
Pfam domain/function: PF02222 ATP-grasp; PF03446 NAD_binding_2 [H]
EC number: =6.3.4.18 [H]
Molecular weight: Translated: 42043; Mature: 41912
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSHHKTLLPAAVAAGAQASTLGVMGGGQLGRMFVHAAQRLGYFTAVLDPDVASPAGLVS CCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHH HVHVQTDYLDEQGLAQMLQRCAAITTEFENVPAGALYTLGAHLPAAPGAEAVAVCQDRAR EEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHECCCCCCCCCCCHHHHHHHHHHH EKRHFEQCGVPCAPHALIETPEQLAGVDAALLPGILKTARLGYDGKGQRRVATRAELALA HHHHHHHCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH WDELKRAPCVLERLLPLAFEISVILARNADGELVSLPVQQNLHRDGILAVTQVPAPNVPA HHHHHCCHHHHHHHHHHHHEEEEEEEECCCCCEEECCHHHCCCCCCEEEEEECCCCCCCC GLSAAARDAAGRIAEGLGYVGVLCVEFFVLQDGTLVVNEMAPRPHNSGHYSIDACDVSQF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEE ELQVRCMTGLPLVAPRLHSPAVMLNLLGDLWFDADGRERTPDWAAVLALPGAHLHLYGKS EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECC SAQRGRKMGHLTLTADTPEAARATALRAAERLGLPAF HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SSHHKTLLPAAVAAGAQASTLGVMGGGQLGRMFVHAAQRLGYFTAVLDPDVASPAGLVS CCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHH HVHVQTDYLDEQGLAQMLQRCAAITTEFENVPAGALYTLGAHLPAAPGAEAVAVCQDRAR EEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHECCCCCCCCCCCHHHHHHHHHHH EKRHFEQCGVPCAPHALIETPEQLAGVDAALLPGILKTARLGYDGKGQRRVATRAELALA HHHHHHHCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH WDELKRAPCVLERLLPLAFEISVILARNADGELVSLPVQQNLHRDGILAVTQVPAPNVPA HHHHHCCHHHHHHHHHHHHEEEEEEEECCCCCEEECCHHHCCCCCCEEEEEECCCCCCCC GLSAAARDAAGRIAEGLGYVGVLCVEFFVLQDGTLVVNEMAPRPHNSGHYSIDACDVSQF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEE ELQVRCMTGLPLVAPRLHSPAVMLNLLGDLWFDADGRERTPDWAAVLALPGAHLHLYGKS EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECC SAQRGRKMGHLTLTADTPEAARATALRAAERLGLPAF HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3036807; 9384377 [H]