Click here to switch to the map view.

The map label for this gene is ydcO [H]

Identifier: 124265372

GI number: 124265372

Start: 194780

End: 195952

Strand: Direct

Name: ydcO [H]

Synonym: Mpe_A0179

Alternate gene names: 124265372

Gene position: 194780-195952 (Clockwise)

Preceding gene: 124265371

Following gene: 124265373

Centisome position: 4.82

GC content: 72.8

Gene sequence:

>1173_bases
ATGCTGCGCCGCTTCGTCACCGACTTCTCGCTCTCCGCCGCCACTGCCGGCTTCGTGGCCACGCTGGTCGGCTTCACCAG
CTCGGTCGCCATCGTGTTCCAGGCGGCGCAGTCCTTCGGCGCGACGCCCGCGGAAACCAGCTCGTGGATGTGGGCGCTGG
GGCTCGGCATGGGCCTGACGACGCTGCTGCCCTCGCTGCGGTGGCGCCAGCCGGCGATCACGGCCTGGTCGACGCCGGGC
GCGGCGCTGCTCGCGACGGCCGGCGCGGGCTACACGATGGCGGATGCGGTGGGGGCCTTCCTCGTCTGCGCCGCCCTCAT
CACGCTGGCCGGCGTCACCGGCTGGTTCGAGCGGGTCATGAGCCGCATCCCGGTCGCGCTGGCGTCGGCGCTGCTGGCCG
GCGTGCTGGCGCGCTTCGGCATCGAGGCCTTCGCCGCGGCGCGCACCGCGCTGCCGCTGGTGCTGCTGATGCTGGCGTTC
TACCTGGTCGGCCGGCGCTTCTGGCCGCGCTACGCGATCGTGGTCGTGCTGGCGGTGGCGACCGGTTTCGTCGCCTTCCA
GGGCCGCCTGCACACCGAGGCCGTCTCGTGGTCGCTCGCGCAGCCGGTCTTCACCGCGCCGCGCTTCAGCCTCGCGGCGA
CCGTGAGCCTGGCGCTGCCGCTGTTCATCGTCACCATGGCCTCGCAGAACCTGCCGGGCGTCGCGGCGATCCGTGCCGCC
GGCTATGCGATGCCGGTGTCGCGGCTGATCGCGATCACCGGCGCGGCAACGCTGCTGCTGGCACCGTTCGGGGCCTTCGC
GATGAACCTGGCGGCCATCACCGCGGCCATCTGCATGGGCCGCGAGGCGCACGAGGATCCGGCGCGGCGCTATGTCGCCG
CGGCCGTCTGCGGCCTGCTGTACTGCGTGATCGGCGTGTTCGGCGCAGCGGTCACCGGCGTGCTGACGGCCTTTCCGCGC
GAGCTGGTGGTCGCGATCGCCGGCTTCGCGCTGCTCGGCACGATCGCCAACGCGCTGGCGGCGGCCTTTCGCGACGAGGG
GCACCGCGAGGCGGCGCTGATCACTTTCCTGGTCACGCTGTCGGGCGTCACGATCGCGGGCATCGGCGCGGCCTTCTGGG
GCGTGGTCGCCGGCACGATCGCTCTCGTTGTGCAACAGTGGCGCAAGACCTGA

Upstream 100 bases:

>100_bases
CCTTGTACGAAGCGACCGCCTGAGTCTGCAGGCGGCGCGGCGCCGGCGCTGAAGACGGGCGGCTGCCCCTGGCGCGGCCG
TGCGCCGGGATACTCCGGCC

Downstream 100 bases:

>100_bases
GCCTTCCGAAGGACGCTTTCGATGCAACTGCTCTTCATCGCCGATCCGCTGGACCACTTCAAGACCTACAAGGACACCAC
CTTCTCGATGATGCGCGAGG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MLRRFVTDFSLSAATAGFVATLVGFTSSVAIVFQAAQSFGATPAETSSWMWALGLGMGLTTLLPSLRWRQPAITAWSTPG
AALLATAGAGYTMADAVGAFLVCAALITLAGVTGWFERVMSRIPVALASALLAGVLARFGIEAFAAARTALPLVLLMLAF
YLVGRRFWPRYAIVVVLAVATGFVAFQGRLHTEAVSWSLAQPVFTAPRFSLAATVSLALPLFIVTMASQNLPGVAAIRAA
GYAMPVSRLIAITGAATLLLAPFGAFAMNLAAITAAICMGREAHEDPARRYVAAAVCGLLYCVIGVFGAAVTGVLTAFPR
ELVVAIAGFALLGTIANALAAAFRDEGHREAALITFLVTLSGVTIAGIGAAFWGVVAGTIALVVQQWRKT

Sequences:

>Translated_390_residues
MLRRFVTDFSLSAATAGFVATLVGFTSSVAIVFQAAQSFGATPAETSSWMWALGLGMGLTTLLPSLRWRQPAITAWSTPG
AALLATAGAGYTMADAVGAFLVCAALITLAGVTGWFERVMSRIPVALASALLAGVLARFGIEAFAAARTALPLVLLMLAF
YLVGRRFWPRYAIVVVLAVATGFVAFQGRLHTEAVSWSLAQPVFTAPRFSLAATVSLALPLFIVTMASQNLPGVAAIRAA
GYAMPVSRLIAITGAATLLLAPFGAFAMNLAAITAAICMGREAHEDPARRYVAAAVCGLLYCVIGVFGAAVTGVLTAFPR
ELVVAIAGFALLGTIANALAAAFRDEGHREAALITFLVTLSGVTIAGIGAAFWGVVAGTIALVVQQWRKT
>Mature_390_residues
MLRRFVTDFSLSAATAGFVATLVGFTSSVAIVFQAAQSFGATPAETSSWMWALGLGMGLTTLLPSLRWRQPAITAWSTPG
AALLATAGAGYTMADAVGAFLVCAALITLAGVTGWFERVMSRIPVALASALLAGVLARFGIEAFAAARTALPLVLLMLAF
YLVGRRFWPRYAIVVVLAVATGFVAFQGRLHTEAVSWSLAQPVFTAPRFSLAATVSLALPLFIVTMASQNLPGVAAIRAA
GYAMPVSRLIAITGAATLLLAPFGAFAMNLAAITAAICMGREAHEDPARRYVAAAVCGLLYCVIGVFGAAVTGVLTAFPR
ELVVAIAGFALLGTIANALAAAFRDEGHREAALITFLVTLSGVTIAGIGAAFWGVVAGTIALVVQQWRKT

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=378, Percent_Identity=48.9417989417989, Blast_Score=332, Evalue=2e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40389; Mature: 40389

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRFVTDFSLSAATAGFVATLVGFTSSVAIVFQAAQSFGATPAETSSWMWALGLGMGLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TLLPSLRWRQPAITAWSTPGAALLATAGAGYTMADAVGAFLVCAALITLAGVTGWFERVM
HHHHHHHCCCCCCEEECCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRIPVALASALLAGVLARFGIEAFAAARTALPLVLLMLAFYLVGRRFWPRYAIVVVLAVA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
TGFVAFQGRLHTEAVSWSLAQPVFTAPRFSLAATVSLALPLFIVTMASQNLPGVAAIRAA
HHHHHHCCCHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
GYAMPVSRLIAITGAATLLLAPFGAFAMNLAAITAAICMGREAHEDPARRYVAAAVCGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
YCVIGVFGAAVTGVLTAFPRELVVAIAGFALLGTIANALAAAFRDEGHREAALITFLVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SGVTIAGIGAAFWGVVAGTIALVVQQWRKT
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLRRFVTDFSLSAATAGFVATLVGFTSSVAIVFQAAQSFGATPAETSSWMWALGLGMGLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TLLPSLRWRQPAITAWSTPGAALLATAGAGYTMADAVGAFLVCAALITLAGVTGWFERVM
HHHHHHHCCCCCCEEECCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRIPVALASALLAGVLARFGIEAFAAARTALPLVLLMLAFYLVGRRFWPRYAIVVVLAVA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
TGFVAFQGRLHTEAVSWSLAQPVFTAPRFSLAATVSLALPLFIVTMASQNLPGVAAIRAA
HHHHHHCCCHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
GYAMPVSRLIAITGAATLLLAPFGAFAMNLAAITAAICMGREAHEDPARRYVAAAVCGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
YCVIGVFGAAVTGVLTAFPRELVVAIAGFALLGTIANALAAAFRDEGHREAALITFLVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SGVTIAGIGAAFWGVVAGTIALVVQQWRKT
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]