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The map label for this gene is ubiD [C]

Identifier: 124025380

GI number: 124025380

Start: 617548

End: 619125

Strand: Reverse

Name: ubiD [C]

Synonym: NATL1_06711

Alternate gene names: 124025380

Gene position: 619125-617548 (Counterclockwise)

Preceding gene: 124025386

Following gene: 229000869

Centisome position: 33.2

GC content: 40.68

Gene sequence:

>1578_bases
GTGCAGACCTTCATGAAATTATTTCGTCAAGAACCTCTTACACGGGACATTAGAGATTTTCTTACTCTTTTAGAAAAGAA
AGGACAACTGAAAAGAATAAGCAGTCCAGTTGATAGTGACTTAGAAATTGCGGCAATAAGTGATCGAGTCCTTGGGATGG
GAGGTCCTGCTCTACTTTTTGAAAATGTAAAAGGATCATCAATGCCTGTTGCAGTGAATTTACTTGGGACGATGGAACGT
GTGGTTTGGAGTATGGGTTTAGAGAAGCAAGAAGAATTGGAAGATTTAGGGAAGAAATTAGCTCTTCTTCAGCAACCACG
TCCTCCGAAAGGGCTTAAAGAAACCAAAGCTTTTGCTTCAGTTGCATGGGATCTACTGAAAGCACGTCCAGATATTGATC
TATTGCCACCATGCCATCAACAAGTAATTAGTAAAAAAGACTTGGATCTAAATCATTTGCCACTTTTGCGTCCCTGGCCA
GAGGATGCTGGAGGAGCAATCACTTTAGGCCTTGTAATAACAAAAGATCCAGAAACAAGCGTGCCAAATGTCGGTGTTTA
CAGACTCCAAAGACAGTCTGCAAAGAGCATGACAGTCCATTGGTTAAGTGTCAGAGGAGGAGCCAGGCATCTTCGCAAAG
CAGCTGCAATGAATAAGAAACTAGAAGTAGCTGTTGCTATTGGAGTTCATCCACTTCTTGTCATGGCGGCAGCAACTCCC
ATTCCAGTGCAGCTAAGCGAGTGGCTTTTTGCAGGCTTGTATGCAGGAGAGGGTGTTCGATTAACCAAATGCAAAACTAT
TGATCTTCAGGTACCAAGTCATAGTGAAATTGTTCTTGAAGGGTCTATATCTCCTGGAGAAGAGATGATGGATGGTCCTT
TTGGAGACCATATGGGCTTCTATGGGGGTGCTGAGTCTTCACCTTTGATTAGATTCCACTGTATGACTCAAAGAAAAAAA
CCAATATTCTTAACAACTTTTAGCGGTCGGCCTCCAAAAGAAGAAGCAATGCTGGCAATAGCATTAAATCGAATTTATAC
ACCAATACTTAAACAACAAATACCTGAAATTATTGATTTTTTCCTTCCGATGGAAGCCTTGAGTTATAAGTTGGCAGTCA
TATCAATTGACAAAGCTTATCCAGGTCAAGCTAAAAGAGCTGCTATGGCCTTTTGGAGTGCTTTACCCCAATTTACTTAT
ACAAAATTTGTCGTCGTCGTAGACTCAACAATTAACGTAAGAGATCCTAGACAAGTCGTTTGGGTCTTATCCAGCCAAGT
TGACCCTCAAAGAGATTTATTTGTGCTTGAAAATACTCCTTTTGATACCCTTGACTTCGCGAGTGAAAATATTGGCTTAG
GAGGGAGATTGGCTATTGATGCAACAACAAAAATTGGCCCAGAGAAAAATCATGATTGGGGCAAACCACTAACAAGGCCG
AAAGAGCTTGAAGACAAAGTTGATGAAAGATGGGAAGAACTAGGGTTATCGGAACTGGAAAACAAGCAACCAAGTCCAGA
ATTATTTGGTTATGTTATCGATGAATTAATGCGTCAAAAACAAATAAACAATTCATAA

Upstream 100 bases:

>100_bases
AATTCCATCAGGAACATCTGCCGCTACATAAAAATAAGAAAGTTTCATTTCCACAAAGGCTGATAACTTGCGTCACAGTA
ACTAGATAAATAGGTTAATC

Downstream 100 bases:

>100_bases
ATCAGTAATAAAGCTTATCGAGAAATAAAATATAAAAAAATATATTTTTTTTCATTGAAAGCTCCCACTAAAGATCAGTC
TTTAAGAAACCTTCAAAAAG

Product: 3-polyprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MQTFMKLFRQEPLTRDIRDFLTLLEKKGQLKRISSPVDSDLEIAAISDRVLGMGGPALLFENVKGSSMPVAVNLLGTMER
VVWSMGLEKQEELEDLGKKLALLQQPRPPKGLKETKAFASVAWDLLKARPDIDLLPPCHQQVISKKDLDLNHLPLLRPWP
EDAGGAITLGLVITKDPETSVPNVGVYRLQRQSAKSMTVHWLSVRGGARHLRKAAAMNKKLEVAVAIGVHPLLVMAAATP
IPVQLSEWLFAGLYAGEGVRLTKCKTIDLQVPSHSEIVLEGSISPGEEMMDGPFGDHMGFYGGAESSPLIRFHCMTQRKK
PIFLTTFSGRPPKEEAMLAIALNRIYTPILKQQIPEIIDFFLPMEALSYKLAVISIDKAYPGQAKRAAMAFWSALPQFTY
TKFVVVVDSTINVRDPRQVVWVLSSQVDPQRDLFVLENTPFDTLDFASENIGLGGRLAIDATTKIGPEKNHDWGKPLTRP
KELEDKVDERWEELGLSELENKQPSPELFGYVIDELMRQKQINNS

Sequences:

>Translated_525_residues
MQTFMKLFRQEPLTRDIRDFLTLLEKKGQLKRISSPVDSDLEIAAISDRVLGMGGPALLFENVKGSSMPVAVNLLGTMER
VVWSMGLEKQEELEDLGKKLALLQQPRPPKGLKETKAFASVAWDLLKARPDIDLLPPCHQQVISKKDLDLNHLPLLRPWP
EDAGGAITLGLVITKDPETSVPNVGVYRLQRQSAKSMTVHWLSVRGGARHLRKAAAMNKKLEVAVAIGVHPLLVMAAATP
IPVQLSEWLFAGLYAGEGVRLTKCKTIDLQVPSHSEIVLEGSISPGEEMMDGPFGDHMGFYGGAESSPLIRFHCMTQRKK
PIFLTTFSGRPPKEEAMLAIALNRIYTPILKQQIPEIIDFFLPMEALSYKLAVISIDKAYPGQAKRAAMAFWSALPQFTY
TKFVVVVDSTINVRDPRQVVWVLSSQVDPQRDLFVLENTPFDTLDFASENIGLGGRLAIDATTKIGPEKNHDWGKPLTRP
KELEDKVDERWEELGLSELENKQPSPELFGYVIDELMRQKQINNS
>Mature_525_residues
MQTFMKLFRQEPLTRDIRDFLTLLEKKGQLKRISSPVDSDLEIAAISDRVLGMGGPALLFENVKGSSMPVAVNLLGTMER
VVWSMGLEKQEELEDLGKKLALLQQPRPPKGLKETKAFASVAWDLLKARPDIDLLPPCHQQVISKKDLDLNHLPLLRPWP
EDAGGAITLGLVITKDPETSVPNVGVYRLQRQSAKSMTVHWLSVRGGARHLRKAAAMNKKLEVAVAIGVHPLLVMAAATP
IPVQLSEWLFAGLYAGEGVRLTKCKTIDLQVPSHSEIVLEGSISPGEEMMDGPFGDHMGFYGGAESSPLIRFHCMTQRKK
PIFLTTFSGRPPKEEAMLAIALNRIYTPILKQQIPEIIDFFLPMEALSYKLAVISIDKAYPGQAKRAAMAFWSALPQFTY
TKFVVVVDSTINVRDPRQVVWVLSSQVDPQRDLFVLENTPFDTLDFASENIGLGGRLAIDATTKIGPEKNHDWGKPLTRP
KELEDKVDERWEELGLSELENKQPSPELFGYVIDELMRQKQINNS

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=491, Percent_Identity=45.4175152749491, Blast_Score=449, Evalue=1e-127,
Organism=Saccharomyces cerevisiae, GI6320748, Length=520, Percent_Identity=24.8076923076923, Blast_Score=127, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 58572; Mature: 58572

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTFMKLFRQEPLTRDIRDFLTLLEKKGQLKRISSPVDSDLEIAAISDRVLGMGGPALLF
CHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEECCHHCCCCCHHHEE
ENVKGSSMPVAVNLLGTMERVVWSMGLEKQEELEDLGKKLALLQQPRPPKGLKETKAFAS
ECCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VAWDLLKARPDIDLLPPCHQQVISKKDLDLNHLPLLRPWPEDAGGAITLGLVITKDPETS
HHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
VPNVGVYRLQRQSAKSMTVHWLSVRGGARHLRKAAAMNKKLEVAVAIGVHPLLVMAAATP
CCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCC
IPVQLSEWLFAGLYAGEGVRLTKCKTIDLQVPSHSEIVLEGSISPGEEMMDGPFGDHMGF
CCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCEEEECCCCCCHHHHCCCCCCCCCC
YGGAESSPLIRFHCMTQRKKPIFLTTFSGRPPKEEAMLAIALNRIYTPILKQQIPEIIDF
CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLPMEALSYKLAVISIDKAYPGQAKRAAMAFWSALPQFTYTKFVVVVDSTINVRDPRQVV
HHCHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHE
WVLSSQVDPQRDLFVLENTPFDTLDFASENIGLGGRLAIDATTKIGPEKNHDWGKPLTRP
EEHHCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
KELEDKVDERWEELGLSELENKQPSPELFGYVIDELMRQKQINNS
HHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQTFMKLFRQEPLTRDIRDFLTLLEKKGQLKRISSPVDSDLEIAAISDRVLGMGGPALLF
CHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEECCHHCCCCCHHHEE
ENVKGSSMPVAVNLLGTMERVVWSMGLEKQEELEDLGKKLALLQQPRPPKGLKETKAFAS
ECCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VAWDLLKARPDIDLLPPCHQQVISKKDLDLNHLPLLRPWPEDAGGAITLGLVITKDPETS
HHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
VPNVGVYRLQRQSAKSMTVHWLSVRGGARHLRKAAAMNKKLEVAVAIGVHPLLVMAAATP
CCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCC
IPVQLSEWLFAGLYAGEGVRLTKCKTIDLQVPSHSEIVLEGSISPGEEMMDGPFGDHMGF
CCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCEEEECCCCCCHHHHCCCCCCCCCC
YGGAESSPLIRFHCMTQRKKPIFLTTFSGRPPKEEAMLAIALNRIYTPILKQQIPEIIDF
CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLPMEALSYKLAVISIDKAYPGQAKRAAMAFWSALPQFTYTKFVVVVDSTINVRDPRQVV
HHCHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHE
WVLSSQVDPQRDLFVLENTPFDTLDFASENIGLGGRLAIDATTKIGPEKNHDWGKPLTRP
EEHHCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
KELEDKVDERWEELGLSELENKQPSPELFGYVIDELMRQKQINNS
HHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]