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The map label for this gene is xisA [H]

Identifier: 124025292

GI number: 124025292

Start: 526414

End: 527574

Strand: Reverse

Name: xisA [H]

Synonym: NATL1_05811

Alternate gene names: 124025292

Gene position: 527574-526414 (Counterclockwise)

Preceding gene: 124025296

Following gene: 124025291

Centisome position: 28.29

GC content: 34.02

Gene sequence:

>1161_bases
ATGGACGAGAATCAAAAGTTACTAGATATCAACCAAGACCTTGAATCAAAGGGAATCAATCTAAGAATTGAGAAAAGGGG
TAAAGTTTTAAACATTCGTGGTTCTTTGCCAGATAAGAAATCTCATGATCTTTCTAAAGTTCAAAGAATAAGTCTGAAAC
TTCCACACGACATTAACGGTCTAGAAGAAGCTAGAAAAGCTATAGAATTGATAGATTTTCAACTTAAAAAAAATCAATTT
TGTTGGTCTAATTGGATTAAAGAGAAAGCTCTCTCATCAACAAAGACTAATAAAACTGTAATAAGCAATGAAATAGAAAG
CTTTAAAAGACAATTTTTTTCTGATACATCCAGGAGCAAATCATCAGCCGGAATGATCAGCACTTGGCAGTCTGCTTACA
AACCATATTTGAACAGATTAATTGGAGTAAGTCATAAATCTACTCTCAAATTAAGCGAGGAGCTCCTAGTGAAAATCCTT
TTAAGTTACAAAGAAAATTCAAGGAGCAGACAACAATGTGGAATTGCTTTAAGTGCTTTAGCTAGACACCTTAAAGTAGA
GCTACCCAAGAACTGGAAACAACTTCAAAGTGGTTATGGAATACACGAATCAAATTTCAGAGAGTTACCTAGTGATAAAG
AAATTATTAATAGCTTTCAATTAATACCAAATCCAAAATGGAGATTTGTTTTTGCGTTAATGGCAATTTATGGGCTTAGA
AATCATGAAGTCTTTTTTAGTGACTTATCTTGTTTAAAAAAAGGTGGGGATAAAATACTCCGGGTTTTCCCAAATACGAA
AACAGGAGAACATCAAGTTTGGCCATTTCATCCTGAATGGGTTGGTTTATTTGAGCTAGGGAACATAACTGATACTTCAG
ATTTACTCCCAGATATTAAAACAGATCTAAAAGAGACAACTCTTCAACATATAGGAAGAAGAGTATCTGAGCAATTTAGA
AGATATGAAATATCTTTTACCCCCTATGATTTAAGGCATGCATGGGCAGTTAGGACCATCTTAATAGGCCTACCAAATAC
TGTAGCTGCAAAAATGATGGGACACTCAGTGTCAATACATACAAAAACCTATCATCATTGGATAACAAGAAGAGATCAGC
AAATTGCAGTCGATAGTGCTCTATCTAGAGTCAAATATTAA

Upstream 100 bases:

>100_bases
TTTAATAAGAGGACACCAACCCGAGCCATTTTTGAAAAAACTCCTTATAAAAGGATATACAAACCCTTATCAAAGTAAAG
CTAGCTAAATTTACAGGATC

Downstream 100 bases:

>100_bases
CAAGAAGAATAATTAATATTTATAGCTATATCTATTTTAAAAAATTATTCTTTTATTAACTTATTTAATTTAAGCCAAGG
AAATGAAAAATAAAATCACT

Product: phage integrase family protein

Products: NA

Alternate protein names: NifD element site-specific recombinase [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MDENQKLLDINQDLESKGINLRIEKRGKVLNIRGSLPDKKSHDLSKVQRISLKLPHDINGLEEARKAIELIDFQLKKNQF
CWSNWIKEKALSSTKTNKTVISNEIESFKRQFFSDTSRSKSSAGMISTWQSAYKPYLNRLIGVSHKSTLKLSEELLVKIL
LSYKENSRSRQQCGIALSALARHLKVELPKNWKQLQSGYGIHESNFRELPSDKEIINSFQLIPNPKWRFVFALMAIYGLR
NHEVFFSDLSCLKKGGDKILRVFPNTKTGEHQVWPFHPEWVGLFELGNITDTSDLLPDIKTDLKETTLQHIGRRVSEQFR
RYEISFTPYDLRHAWAVRTILIGLPNTVAAKMMGHSVSIHTKTYHHWITRRDQQIAVDSALSRVKY

Sequences:

>Translated_386_residues
MDENQKLLDINQDLESKGINLRIEKRGKVLNIRGSLPDKKSHDLSKVQRISLKLPHDINGLEEARKAIELIDFQLKKNQF
CWSNWIKEKALSSTKTNKTVISNEIESFKRQFFSDTSRSKSSAGMISTWQSAYKPYLNRLIGVSHKSTLKLSEELLVKIL
LSYKENSRSRQQCGIALSALARHLKVELPKNWKQLQSGYGIHESNFRELPSDKEIINSFQLIPNPKWRFVFALMAIYGLR
NHEVFFSDLSCLKKGGDKILRVFPNTKTGEHQVWPFHPEWVGLFELGNITDTSDLLPDIKTDLKETTLQHIGRRVSEQFR
RYEISFTPYDLRHAWAVRTILIGLPNTVAAKMMGHSVSIHTKTYHHWITRRDQQIAVDSALSRVKY
>Mature_386_residues
MDENQKLLDINQDLESKGINLRIEKRGKVLNIRGSLPDKKSHDLSKVQRISLKLPHDINGLEEARKAIELIDFQLKKNQF
CWSNWIKEKALSSTKTNKTVISNEIESFKRQFFSDTSRSKSSAGMISTWQSAYKPYLNRLIGVSHKSTLKLSEELLVKIL
LSYKENSRSRQQCGIALSALARHLKVELPKNWKQLQSGYGIHESNFRELPSDKEIINSFQLIPNPKWRFVFALMAIYGLR
NHEVFFSDLSCLKKGGDKILRVFPNTKTGEHQVWPFHPEWVGLFELGNITDTSDLLPDIKTDLKETTLQHIGRRVSEQFR
RYEISFTPYDLRHAWAVRTILIGLPNTVAAKMMGHSVSIHTKTYHHWITRRDQQIAVDSALSRVKY

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 11 kb nifD element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44669; Mature: 44669

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDENQKLLDINQDLESKGINLRIEKRGKVLNIRGSLPDKKSHDLSKVQRISLKLPHDING
CCCCCCEEECCCCHHHCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHEECCCCCCH
LEEARKAIELIDFQLKKNQFCWSNWIKEKALSSTKTNKTVISNEIESFKRQFFSDTSRSK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
SSAGMISTWQSAYKPYLNRLIGVSHKSTLKLSEELLVKILLSYKENSRSRQQCGIALSAL
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ARHLKVELPKNWKQLQSGYGIHESNFRELPSDKEIINSFQLIPNPKWRFVFALMAIYGLR
HHHHEECCCCHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
NHEVFFSDLSCLKKGGDKILRVFPNTKTGEHQVWPFHPEWVGLFELGNITDTSDLLPDIK
CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEHEECCCCCCHHHHHHHHH
TDLKETTLQHIGRRVSEQFRRYEISFTPYDLRHAWAVRTILIGLPNTVAAKMMGHSVSIH
HHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEE
TKTYHHWITRRDQQIAVDSALSRVKY
HHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDENQKLLDINQDLESKGINLRIEKRGKVLNIRGSLPDKKSHDLSKVQRISLKLPHDING
CCCCCCEEECCCCHHHCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHEECCCCCCH
LEEARKAIELIDFQLKKNQFCWSNWIKEKALSSTKTNKTVISNEIESFKRQFFSDTSRSK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
SSAGMISTWQSAYKPYLNRLIGVSHKSTLKLSEELLVKILLSYKENSRSRQQCGIALSAL
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ARHLKVELPKNWKQLQSGYGIHESNFRELPSDKEIINSFQLIPNPKWRFVFALMAIYGLR
HHHHEECCCCHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
NHEVFFSDLSCLKKGGDKILRVFPNTKTGEHQVWPFHPEWVGLFELGNITDTSDLLPDIK
CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEHEECCCCCCHHHHHHHHH
TDLKETTLQHIGRRVSEQFRRYEISFTPYDLRHAWAVRTILIGLPNTVAAKMMGHSVSIH
HHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEE
TKTYHHWITRRDQQIAVDSALSRVKY
HHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3006922; 11759840; 3144039 [H]