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The map label for this gene is 123968094

Identifier: 123968094

GI number: 123968094

Start: 486858

End: 487283

Strand: Reverse

Name: 123968094

Synonym: A9601_05591

Alternate gene names: NA

Gene position: 487283-486858 (Counterclockwise)

Preceding gene: 123968097

Following gene: 123968092

Centisome position: 29.18

GC content: 34.27

Gene sequence:

>426_bases
ATGAATCATTGTTTAATTCAGGCGGTCATTAATAGCGCTCCCCAAATGAGGTATACCAAAGAAAACCAAACTCCAATTGC
AGAAATGATTGTTAATTTTAAAGGATTACGTAGTGAAGATCCAACCAGAAATCTCAAGATCATAGGATGGGGAAATATTG
CCCAAGAAATGGTAGATGAACTAAAGGAGGGGCAAAATATTGTTATTGAGGGACGTCTAAAGATGAATTCTGTCACTAGA
AAAGATGGAACAAAAGAAAAACAACCAGAACTAACAGCTTCAAAAATTCATCAAATATCGCCAGTTGATGTTATTAAGTC
TGATCAAAAAGAAAATAATGAGTCATATGAAAATAAAGAAACCGCCAAAAAATCTAGTTGGGATAGTTCACCTTTAGTAC
CTGAAGTGGACGAAATACCTTTTTAA

Upstream 100 bases:

>100_bases
AGCTATTACAGGTCCATCCGAAGTTCCTGATAGGATCCAAACATTTTTATAGCAATTTCCTGGATTCTGCATCAGTATGT
CTTTAATTAAATAGTAAGTA

Downstream 100 bases:

>100_bases
ATCAAATATCAACATTATTTTCTTGAACACTTATAATTAATTTGCTTATTTTTCTTTCAAGCGCGGCAAGTTCGCTTCTG
ATTTCTGGCCATTTACCCTT

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: Thylakoid-associated SSB [H]

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MNHCLIQAVINSAPQMRYTKENQTPIAEMIVNFKGLRSEDPTRNLKIIGWGNIAQEMVDELKEGQNIVIEGRLKMNSVTR
KDGTKEKQPELTASKIHQISPVDVIKSDQKENNESYENKETAKKSSWDSSPLVPEVDEIPF

Sequences:

>Translated_141_residues
MNHCLIQAVINSAPQMRYTKENQTPIAEMIVNFKGLRSEDPTRNLKIIGWGNIAQEMVDELKEGQNIVIEGRLKMNSVTR
KDGTKEKQPELTASKIHQISPVDVIKSDQKENNESYENKETAKKSSWDSSPLVPEVDEIPF
>Mature_141_residues
MNHCLIQAVINSAPQMRYTKENQTPIAEMIVNFKGLRSEDPTRNLKIIGWGNIAQEMVDELKEGQNIVIEGRLKMNSVTR
KDGTKEKQPELTASKIHQISPVDVIKSDQKENNESYENKETAKKSSWDSSPLVPEVDEIPF

Specific function: Unknown

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16009; Mature: 16009

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHCLIQAVINSAPQMRYTKENQTPIAEMIVNFKGLRSEDPTRNLKIIGWGNIAQEMVDE
CCHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHH
LKEGQNIVIEGRLKMNSVTRKDGTKEKQPELTASKIHQISPVDVIKSDQKENNESYENKE
HHCCCEEEEECCEECCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCHHHHHH
TAKKSSWDSSPLVPEVDEIPF
HHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNHCLIQAVINSAPQMRYTKENQTPIAEMIVNFKGLRSEDPTRNLKIIGWGNIAQEMVDE
CCHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHH
LKEGQNIVIEGRLKMNSVTRKDGTKEKQPELTASKIHQISPVDVIKSDQKENNESYENKE
HHCCCEEEEECCEECCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCHHHHHH
TAKKSSWDSSPLVPEVDEIPF
HHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]