| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is yfiQ [C]
Identifier: 121610262
GI number: 121610262
Start: 3705818
End: 3707929
Strand: Direct
Name: yfiQ [C]
Synonym: Veis_3321
Alternate gene names: 121610262
Gene position: 3705818-3707929 (Clockwise)
Preceding gene: 121610261
Following gene: 121610264
Centisome position: 66.57
GC content: 70.45
Gene sequence:
>2112_bases ATGACCGGCCCCGGCCTCGCTGCGGGCGCTCTGGCGCAAGCGCTGCTCCAGCCCCGAAGCATCGCGCTGTACGGGGCCTC GGACGACCCCGGCAAGATCGCCGGGCGTCCGCTGCAGTTTCTGCAACGCTCGGGCTATGCTGGACGCATCTACCCGATCA ACCCGGGACGCCCGCAGGTTCAGGGCCTCAAGGCCTGGCCGAGCCTGGATCGGTTGCCCGAGGTGCCAGAGCAGGTCTTT GTGCTGACGCCCACTGGGCAGGTGCTCGCTGCCGCCCATCGATGCGCTGCGCTGGGGGTGAAACTGATCACCATCCTGGC CAGCGGTTTTTCCGAATCCGGCCGGGAAGGGCTGCAGCGCGAAGCAGAGCTGCGCGATCTGGCGCGGGCCAGCGGCATGC GCATCCTTGGCCCGAGCAGCCTGGGGGTGGTCAATCCGCGTGTGGGACTGGTGCTGACCGCCAACGCCGTATTTGCCGAG CCCGAACTGCCCGTCGGCAAAGTCTTCGTCGCATCGCACAGTGGCAGCATGATCGGTGCGCTGGTCTCGCGCGGCAAGGC GCGCGCGGTGGGCTTTGCGGGGCTGGTGTCGGTGGGCAGCGAAGCCGACCTGAGCCTGGGAGAAATCTGCCAGGCCACGC TCGATGACCCGGGCATCGAGGGCTACCTGCTGTTCCTCGAAAGCCTGCGCCATGGCGCCGCGTTGCAGCGGTTCGCGCGC GCGGCTGCGGCCTGCGGGAAACCCGTCATTGCTTACAAACTGGGCCGCTCGGAGGCCGCTGCGCAGATGGCCGGCACCCA CACCGGCGCTCTGGCCGGCGCGGACGACATCGCCGACGCATTCCTCAAGGACCTGGGCATCGCCCGCGTGCAGATGCTGG AGTCCCTGCTCGAAGCCTTGCCGCTCGCGCAGCGCCTGCCGTTGCCGTTATTGCGGCCCGACATGCCGCCGGCCCGCCGG GTGGGCGTGGTGAGCACCACGGGCGGCGGCGCCGCGATGGTGGTCGATCAACTGGGTGTGCGCGGCCTGCAGGTGCAGTG CCCTTCCGAGGCCACGCAAGAGCGCCTGAAGGCGGCCGGCATCCCCGGCAACGCCGGGCGCGTGCTCGACCTGACCTTGG CCGGCACCCGCTACGCCGTGATGAAGGCGGCGCTGCAGATCCTGCTCGACGCGCCCGAGTTCGACATGCTGATCGCCGTG CTCGGCTCCTCGGCGCGCTTGCAGCCGCAGTTGGCGCTCCAGCCGATCCTGGACAGCGCCAGCCATCGCAAGCCGCTGAT GGCCATGCTGCTGCCCGATGCGCCGCAAGCGCTGGCGCAGCTAAGCCGGGCCGCCGTGCCCTGCTTTCGCACCCCGGAGG GCTGTGCCGACGTGCTGGCCGCAGTGCTGGCGCGGCGCTCGCCCGGGGCGCCGGCCTGCCCGGACCATGGCGGCGCCGGC GCCGCGTTCATCGACGAGGCGCAGTCCTATGCCGTGCTCGACGAACTGCAACTGCCCCATGCGCCCGTGCTCACCGCAGC GCTGGCCGGCCCGGTGCCCGGGGTGCTGCCGTTCCCGTTCCCGGTGGCGGTCAAGCTGTGTTCAGCGCAGATTCTTCACA AGACCGAAGTCGGTGGCGTGGTGCTGGGGGTGGATTCGGCCCAGGCGCTGTCGGAGGCTTTCGCCACCCTGCGCCAGCGG CTGACAGAGCGCTTGCCCGGCGTGCCGTGCGAGCAGGTGCTGCTGCAGCCCATGTGCCAGGGATTGATCGAGGTGCTGCT GGGCTATCGCGTCGATCCGGATGCCGGCCTCATCGTGCTGCTGGCGGCCGGGGGCATCTGGGCGGAACTGGTGCGCGAGC GCAGCATCCGCCTGGCACCCGTTGGCATCGGCAGCGCCTGGGAGATGATCGGCGAGGTCCGGGCGCTGCAGACCGTGGCC GGCCTGCGTGGGCAACCCAAGGGCGACCTGGCCGCATTGGCGCAGGCCATCTCGGACTTGTCGCAACTGGCGCTGCGCCC GGAACTGGGCGTGGTGCAGGCCGAGATGAACCCGATGCTGGTGCTCAGGGAGGGCCAAGGCGTGCTGGCGCTCGACGCTG TCGTCATGCGCAAGGACTGGGTTGGCCCATGA
Upstream 100 bases:
>100_bases CGCTGGTCATTGGCAACAGCCCGCAAGAGTTCAGGGACGAAATCCGCCAGGAGGTCGCTGCCTGGGCCGCACAGTTCAAG CACCTCGGCAGGGCGCTGCA
Downstream 100 bases:
>100_bases ATAGTCGCGCTTTTCCTGGAAACGCGGCGCGACGGAACAGCCACTGAACCAGTTCGCGCTTCCTGGTTCCAGCTATCGGT GCGCGAAGCCTGGGGGTGCG
Product: CoA-binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 703; Mature: 702
Protein sequence:
>703_residues MTGPGLAAGALAQALLQPRSIALYGASDDPGKIAGRPLQFLQRSGYAGRIYPINPGRPQVQGLKAWPSLDRLPEVPEQVF VLTPTGQVLAAAHRCAALGVKLITILASGFSESGREGLQREAELRDLARASGMRILGPSSLGVVNPRVGLVLTANAVFAE PELPVGKVFVASHSGSMIGALVSRGKARAVGFAGLVSVGSEADLSLGEICQATLDDPGIEGYLLFLESLRHGAALQRFAR AAAACGKPVIAYKLGRSEAAAQMAGTHTGALAGADDIADAFLKDLGIARVQMLESLLEALPLAQRLPLPLLRPDMPPARR VGVVSTTGGGAAMVVDQLGVRGLQVQCPSEATQERLKAAGIPGNAGRVLDLTLAGTRYAVMKAALQILLDAPEFDMLIAV LGSSARLQPQLALQPILDSASHRKPLMAMLLPDAPQALAQLSRAAVPCFRTPEGCADVLAAVLARRSPGAPACPDHGGAG AAFIDEAQSYAVLDELQLPHAPVLTAALAGPVPGVLPFPFPVAVKLCSAQILHKTEVGGVVLGVDSAQALSEAFATLRQR LTERLPGVPCEQVLLQPMCQGLIEVLLGYRVDPDAGLIVLLAAGGIWAELVRERSIRLAPVGIGSAWEMIGEVRALQTVA GLRGQPKGDLAALAQAISDLSQLALRPELGVVQAEMNPMLVLREGQGVLALDAVVMRKDWVGP
Sequences:
>Translated_703_residues MTGPGLAAGALAQALLQPRSIALYGASDDPGKIAGRPLQFLQRSGYAGRIYPINPGRPQVQGLKAWPSLDRLPEVPEQVF VLTPTGQVLAAAHRCAALGVKLITILASGFSESGREGLQREAELRDLARASGMRILGPSSLGVVNPRVGLVLTANAVFAE PELPVGKVFVASHSGSMIGALVSRGKARAVGFAGLVSVGSEADLSLGEICQATLDDPGIEGYLLFLESLRHGAALQRFAR AAAACGKPVIAYKLGRSEAAAQMAGTHTGALAGADDIADAFLKDLGIARVQMLESLLEALPLAQRLPLPLLRPDMPPARR VGVVSTTGGGAAMVVDQLGVRGLQVQCPSEATQERLKAAGIPGNAGRVLDLTLAGTRYAVMKAALQILLDAPEFDMLIAV LGSSARLQPQLALQPILDSASHRKPLMAMLLPDAPQALAQLSRAAVPCFRTPEGCADVLAAVLARRSPGAPACPDHGGAG AAFIDEAQSYAVLDELQLPHAPVLTAALAGPVPGVLPFPFPVAVKLCSAQILHKTEVGGVVLGVDSAQALSEAFATLRQR LTERLPGVPCEQVLLQPMCQGLIEVLLGYRVDPDAGLIVLLAAGGIWAELVRERSIRLAPVGIGSAWEMIGEVRALQTVA GLRGQPKGDLAALAQAISDLSQLALRPELGVVQAEMNPMLVLREGQGVLALDAVVMRKDWVGP >Mature_702_residues TGPGLAAGALAQALLQPRSIALYGASDDPGKIAGRPLQFLQRSGYAGRIYPINPGRPQVQGLKAWPSLDRLPEVPEQVFV LTPTGQVLAAAHRCAALGVKLITILASGFSESGREGLQREAELRDLARASGMRILGPSSLGVVNPRVGLVLTANAVFAEP ELPVGKVFVASHSGSMIGALVSRGKARAVGFAGLVSVGSEADLSLGEICQATLDDPGIEGYLLFLESLRHGAALQRFARA AAACGKPVIAYKLGRSEAAAQMAGTHTGALAGADDIADAFLKDLGIARVQMLESLLEALPLAQRLPLPLLRPDMPPARRV GVVSTTGGGAAMVVDQLGVRGLQVQCPSEATQERLKAAGIPGNAGRVLDLTLAGTRYAVMKAALQILLDAPEFDMLIAVL GSSARLQPQLALQPILDSASHRKPLMAMLLPDAPQALAQLSRAAVPCFRTPEGCADVLAAVLARRSPGAPACPDHGGAGA AFIDEAQSYAVLDELQLPHAPVLTAALAGPVPGVLPFPFPVAVKLCSAQILHKTEVGGVVLGVDSAQALSEAFATLRQRL TERLPGVPCEQVLLQPMCQGLIEVLLGYRVDPDAGLIVLLAAGGIWAELVRERSIRLAPVGIGSAWEMIGEVRALQTVAG LRGQPKGDLAALAQAISDLSQLALRPELGVVQAEMNPMLVLREGQGVLALDAVVMRKDWVGP
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfiQ [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=719, Percent_Identity=26.4255910987483, Blast_Score=166, Evalue=3e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014089 - InterPro: IPR013650 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR005809 - InterPro: IPR016102 [H]
Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]
EC number: NA
Molecular weight: Translated: 73043; Mature: 72912
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPGLAAGALAQALLQPRSIALYGASDDPGKIAGRPLQFLQRSGYAGRIYPINPGRPQV CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCC QGLKAWPSLDRLPEVPEQVFVLTPTGQVLAAAHRCAALGVKLITILASGFSESGREGLQR CCCCCCCCHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH EAELRDLARASGMRILGPSSLGVVNPRVGLVLTANAVFAEPELPVGKVFVASHSGSMIGA HHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECEEEECCCCCCCEEEEEECCCCHHHH LVSRGKARAVGFAGLVSVGSEADLSLGEICQATLDDPGIEGYLLFLESLRHGAALQRFAR HHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH AAAACGKPVIAYKLGRSEAAAQMAGTHTGALAGADDIADAFLKDLGIARVQMLESLLEAL HHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC PLAQRLPLPLLRPDMPPARRVGVVSTTGGGAAMVVDQLGVRGLQVQCPSEATQERLKAAG CHHHHCCCCCCCCCCCHHHCEEEEEECCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHCC IPGNAGRVLDLTLAGTRYAVMKAALQILLDAPEFDMLIAVLGSSARLQPQLALQPILDSA CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC SHRKPLMAMLLPDAPQALAQLSRAAVPCFRTPEGCADVLAAVLARRSPGAPACPDHGGAG CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC AAFIDEAQSYAVLDELQLPHAPVLTAALAGPVPGVLPFPFPVAVKLCSAQILHKTEVGGV CHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE VLGVDSAQALSEAFATLRQRLTERLPGVPCEQVLLQPMCQGLIEVLLGYRVDPDAGLIVL EEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE LAAGGIWAELVRERSIRLAPVGIGSAWEMIGEVRALQTVAGLRGQPKGDLAALAQAISDL EECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SQLALRPELGVVQAEMNPMLVLREGQGVLALDAVVMRKDWVGP HHHHCCCCCCEEEECCCCEEEEECCCCEEEHHHHHHHHCCCCC >Mature Secondary Structure TGPGLAAGALAQALLQPRSIALYGASDDPGKIAGRPLQFLQRSGYAGRIYPINPGRPQV CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCC QGLKAWPSLDRLPEVPEQVFVLTPTGQVLAAAHRCAALGVKLITILASGFSESGREGLQR CCCCCCCCHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH EAELRDLARASGMRILGPSSLGVVNPRVGLVLTANAVFAEPELPVGKVFVASHSGSMIGA HHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECEEEECCCCCCCEEEEEECCCCHHHH LVSRGKARAVGFAGLVSVGSEADLSLGEICQATLDDPGIEGYLLFLESLRHGAALQRFAR HHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH AAAACGKPVIAYKLGRSEAAAQMAGTHTGALAGADDIADAFLKDLGIARVQMLESLLEAL HHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC PLAQRLPLPLLRPDMPPARRVGVVSTTGGGAAMVVDQLGVRGLQVQCPSEATQERLKAAG CHHHHCCCCCCCCCCCHHHCEEEEEECCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHCC IPGNAGRVLDLTLAGTRYAVMKAALQILLDAPEFDMLIAVLGSSARLQPQLALQPILDSA CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC SHRKPLMAMLLPDAPQALAQLSRAAVPCFRTPEGCADVLAAVLARRSPGAPACPDHGGAG CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC AAFIDEAQSYAVLDELQLPHAPVLTAALAGPVPGVLPFPFPVAVKLCSAQILHKTEVGGV CHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE VLGVDSAQALSEAFATLRQRLTERLPGVPCEQVLLQPMCQGLIEVLLGYRVDPDAGLIVL EEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE LAAGGIWAELVRERSIRLAPVGIGSAWEMIGEVRALQTVAGLRGQPKGDLAALAQAISDL EECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SQLALRPELGVVQAEMNPMLVLREGQGVLALDAVVMRKDWVGP HHHHCCCCCCEEEECCCCEEEEECCCCEEEHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]