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The map label for this gene is xseB [H]

Identifier: 121610222

GI number: 121610222

Start: 3660247

End: 3660480

Strand: Direct

Name: xseB [H]

Synonym: Veis_3281

Alternate gene names: 121610222

Gene position: 3660247-3660480 (Clockwise)

Preceding gene: 121610217

Following gene: 121610223

Centisome position: 65.75

GC content: 64.96

Gene sequence:

>234_bases
ATGCACCAGGCTCCTGCCCCACCCGCCGAACCTGCCAGCTACGAGGCCGCACTGCACGAGTTGGAGCAACTCGTGGCGCG
CATCGAGTCGGGCCAGTTGCCGCTCGACCAGATGCTGGCCGGTTACCAGCGCGGCGCCAGTTTGCTGTCCTTTTGCCGCC
AGCGTCTGGATGCGGTGCAGGAGCAGATCAAGGTGCTCGATGATGGCCCGCTGCAACCTTGGGTCCAGCAATGA

Upstream 100 bases:

>100_bases
ATCTGATCGGTGACGCGACACTAGGGTTACTGACCGCCAAGCATGGTGGGCTGCGCCTAGAATCACCGGTTTTCACCCGC
GCCGCGCTGCGCCCATCGCC

Downstream 100 bases:

>100_bases
GCGCCGCTTCCACGCTATCGGCTGCGGCGGCTCCGCTGGACCTGGGCGGCTGGCAGCAAAACCACCTGGCCCAGGTGGAG
CAGGCGCTGTCGCAATGGGT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
MHQAPAPPAEPASYEAALHELEQLVARIESGQLPLDQMLAGYQRGASLLSFCRQRLDAVQEQIKVLDDGPLQPWVQQ

Sequences:

>Translated_77_residues
MHQAPAPPAEPASYEAALHELEQLVARIESGQLPLDQMLAGYQRGASLLSFCRQRLDAVQEQIKVLDDGPLQPWVQQ
>Mature_77_residues
MHQAPAPPAEPASYEAALHELEQLVARIESGQLPLDQMLAGYQRGASLLSFCRQRLDAVQEQIKVLDDGPLQPWVQQ

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8550; Mature: 8550

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQAPAPPAEPASYEAALHELEQLVARIESGQLPLDQMLAGYQRGASLLSFCRQRLDAVQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
EQIKVLDDGPLQPWVQQ
HHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHQAPAPPAEPASYEAALHELEQLVARIESGQLPLDQMLAGYQRGASLLSFCRQRLDAVQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
EQIKVLDDGPLQPWVQQ
HHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA