| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610003
Identifier: 121610003
GI number: 121610003
Start: 3411683
End: 3412672
Strand: Direct
Name: 121610003
Synonym: Veis_3059
Alternate gene names: NA
Gene position: 3411683-3412672 (Clockwise)
Preceding gene: 121610002
Following gene: 121610004
Centisome position: 61.29
GC content: 67.37
Gene sequence:
>990_bases ATGAACAGGCGACATTGGCTCGGCGCAACCCTGTGCGCCGTCGGCACGGCGGCGAGTCTCGTGCCGGTGACTGCACTGGC CGAAGGCGGCGCATGGCCGAACCGGCCGATCCGGCTGATCGTGCCCTTTCCGGCCGGCGGCAGCACCGACATGGTGGCGC GCCATCTCGCGCAAGGTCTCAGTGAGCGCCTTGGCACCTCCGTCATCGTCGACAACCGTGCCGGCGCGGCCGGCAACATC GGCACCGACGCAGTGGCCAAGGCGGCGCCGGACGGGTACACCATCGGCCTGGTCACTTCCGGGCCGATGGTGAACAACAA GTTCCTCTACAAGTCGATGCCCTTCGACCCCGACAAAGACCTGGCCCCGATTGCGTTGGTCTGCGAGATTCCGACGGTCT TCGTCAGCAACCCGGAGCATTTGCCGGCGCGCGACCTCCAGGAATTCATTGCCATGGCGCGGGCCGAGCCCTCGGCGTTC ACCGTCGCCACGCCGGGCAACGGCACGATCGGCCACCTGGCGCTTGCCGAGTTGTCGCTGACATCCGGAGTCCGGCTGCA GGACGTGCCCTATCGCGGCGACACCCCTGCGCTGATGGACCTGCTCGGCGGCGTCGTGCAGGTCATCTCCGCGCCTGTCT CCACTTTCATTCCGGGCATCCTGGCGGGCAAGTTGCGCGGGCTGGCGGTCACTGCGCAAGCGCGCTTGCCCGGGCTGCCC GATGTCCCGACAGCCAGGGAGCAGGGGCTCGATCTGACGGCAAAGGTCTGGTTTGCGGTGGTCGGACCGGCCGGCATGCC GGCTTTGGCGGTGCAGCAGTTGAATGAGCAAATCAACGGACTGCTCGATTCCGCACCGAGCCAAAGCAAGCTGCAGCAGT ACGGCGCCGTGGTCGCGAGCGGGTCGCCCGAATGGCTGCGCCAGCGCATCCATGCCGACGGCCAGAAATGGCAGCAGGTG ATCCGGGCCGCACAGGTCAAGCTCGACTGA
Upstream 100 bases:
>100_bases AACTGCGCGGGCAGGCACAAGCCCGCATGCCGCAATTGCTGCAGCGCCTGGACGCGGCCCGCAAGGCATCTCGATGACAA CACCCGGGAGACTGAAAAAA
Downstream 100 bases:
>100_bases AAGCACGCTCCCATGAACAGCACGAACCCTGCGCCGATCGGCATCTTCGTCAAGACCGGTTCGCCCCAACTGATCGAGGT GCTGGGCACCACGGCACTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MNRRHWLGATLCAVGTAASLVPVTALAEGGAWPNRPIRLIVPFPAGGSTDMVARHLAQGLSERLGTSVIVDNRAGAAGNI GTDAVAKAAPDGYTIGLVTSGPMVNNKFLYKSMPFDPDKDLAPIALVCEIPTVFVSNPEHLPARDLQEFIAMARAEPSAF TVATPGNGTIGHLALAELSLTSGVRLQDVPYRGDTPALMDLLGGVVQVISAPVSTFIPGILAGKLRGLAVTAQARLPGLP DVPTAREQGLDLTAKVWFAVVGPAGMPALAVQQLNEQINGLLDSAPSQSKLQQYGAVVASGSPEWLRQRIHADGQKWQQV IRAAQVKLD
Sequences:
>Translated_329_residues MNRRHWLGATLCAVGTAASLVPVTALAEGGAWPNRPIRLIVPFPAGGSTDMVARHLAQGLSERLGTSVIVDNRAGAAGNI GTDAVAKAAPDGYTIGLVTSGPMVNNKFLYKSMPFDPDKDLAPIALVCEIPTVFVSNPEHLPARDLQEFIAMARAEPSAF TVATPGNGTIGHLALAELSLTSGVRLQDVPYRGDTPALMDLLGGVVQVISAPVSTFIPGILAGKLRGLAVTAQARLPGLP DVPTAREQGLDLTAKVWFAVVGPAGMPALAVQQLNEQINGLLDSAPSQSKLQQYGAVVASGSPEWLRQRIHADGQKWQQV IRAAQVKLD >Mature_329_residues MNRRHWLGATLCAVGTAASLVPVTALAEGGAWPNRPIRLIVPFPAGGSTDMVARHLAQGLSERLGTSVIVDNRAGAAGNI GTDAVAKAAPDGYTIGLVTSGPMVNNKFLYKSMPFDPDKDLAPIALVCEIPTVFVSNPEHLPARDLQEFIAMARAEPSAF TVATPGNGTIGHLALAELSLTSGVRLQDVPYRGDTPALMDLLGGVVQVISAPVSTFIPGILAGKLRGLAVTAQARLPGLP DVPTAREQGLDLTAKVWFAVVGPAGMPALAVQQLNEQINGLLDSAPSQSKLQQYGAVVASGSPEWLRQRIHADGQKWQQV IRAAQVKLD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34445; Mature: 34445
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRRHWLGATLCAVGTAASLVPVTALAEGGAWPNRPIRLIVPFPAGGSTDMVARHLAQGL CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH SERLGTSVIVDNRAGAAGNIGTDAVAKAAPDGYTIGLVTSGPMVNNKFLYKSMPFDPDKD HHHCCCEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEEECCCEECCEEEEECCCCCCCCC LAPIALVCEIPTVFVSNPEHLPARDLQEFIAMARAEPSAFTVATPGNGTIGHLALAELSL CCCEEEEEECCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH TSGVRLQDVPYRGDTPALMDLLGGVVQVISAPVSTFIPGILAGKLRGLAVTAQARLPGLP HCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC DVPTAREQGLDLTAKVWFAVVGPAGMPALAVQQLNEQINGLLDSAPSQSKLQQYGAVVAS CCCCHHHCCCCHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEC GSPEWLRQRIHADGQKWQQVIRAAQVKLD CCHHHHHHHHCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MNRRHWLGATLCAVGTAASLVPVTALAEGGAWPNRPIRLIVPFPAGGSTDMVARHLAQGL CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH SERLGTSVIVDNRAGAAGNIGTDAVAKAAPDGYTIGLVTSGPMVNNKFLYKSMPFDPDKD HHHCCCEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEEECCCEECCEEEEECCCCCCCCC LAPIALVCEIPTVFVSNPEHLPARDLQEFIAMARAEPSAFTVATPGNGTIGHLALAELSL CCCEEEEEECCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH TSGVRLQDVPYRGDTPALMDLLGGVVQVISAPVSTFIPGILAGKLRGLAVTAQARLPGLP HCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC DVPTAREQGLDLTAKVWFAVVGPAGMPALAVQQLNEQINGLLDSAPSQSKLQQYGAVVAS CCCCHHHCCCCHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEC GSPEWLRQRIHADGQKWQQVIRAAQVKLD CCHHHHHHHHCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]