| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609993
Identifier: 121609993
GI number: 121609993
Start: 3401978
End: 3402970
Strand: Direct
Name: 121609993
Synonym: Veis_3049
Alternate gene names: NA
Gene position: 3401978-3402970 (Clockwise)
Preceding gene: 121609992
Following gene: 121609994
Centisome position: 61.11
GC content: 67.77
Gene sequence:
>993_bases ATGCCACGCAGCACCCGTTTGTCGGCGCGCGCCGCCGCACTTTGCGCCATCACCCTGGCCGGTGCGCCGGGTGCGCTGCC ATCGATCCATGCGCAGACCTGGCCCGACAAGCCGATCACCATCGTCGTGCCTTATCCGGCCGGCGGCTCGAACGACAGTT TCGCCCGGCAACTGGCCAAGGAACTGGGCGATCGACTCCAGCAGCCCGTGATCATCGACAACCGCCCCGGAGCCAGCGGC AACACGGGCACGGGCCAAGTGGCCAAGGCCGCAGCGGACGGGTACACGCTGGTGGCCGTGTCCGCGAGTTTTGCCACCAA CGCGGCCGTGCAGTCGAGGCTGCCCTACGACCCGGGCAAGAGCTTCACGCCGGTGGCCCTGTTCGCCAAGGGACCGCTGA TCGTGGCCGTGAACCCGGAGTTTCCGGCCAGGACACCGGCCGAGTTGATCGCTGCCATCCGCGCCCGGCCGGGCCTGTAC AACTACGCCTCATCAGGCGCGGGCAGCGTGAACCAATTCGCCACCGAACTGCTCAAGGCGCAGCTCAGTGGTCTGGACAT TCGCCACATTCCGTACCGCGGCATGGCCCCGGCGGTGACGGACCTGATCGGCAACCAGACGCAACTGCTCATCGCCAGCG GTCCCTCGCTGCTGCCCATGGTGCGCGCGGGCAAGCTCCGTGCAGTAGGCATCACCAGCCTGGAGCCCAGCCCCATCGCT CCCGAACTGCTGCCACTGGCAAGCAGCGTTCCCGGCTATGCGTTCGAGCTGTGGTGGGGCCTGCTGGCACCGGCCGGAAC GCCCGCCGATGTGGTCGGCAAGCTCAACCAGGCGGTCAACCAGACACTGGCCAAGCCGCAGATCGCCGGCAACTTCCTGA AGGAAGGCGCCATCGCCACGCCGCTCTCGCCGGCCCAATTCGGCGCGCTGATCGCCAGCGATGTCGAGCGCTGGAAGAAA CTGGCCAGGCAACAGGGCATTGCGGCGGATTGA
Upstream 100 bases:
>100_bases CGCGCACAGGCCATCGTGGACAGCGCACGGGCGCTGGATTTGCCGCCCTGACGCCGATTCATGGCCGAGACGATTTCAAC CCCCACGGAGACCAGCCACC
Downstream 100 bases:
>100_bases TCGGTGCCCACCCACAGAGGTGTCCAGCCACTTTTTCCGCCCTTCGGAGAATCCCATGCCCCTTGCCCCCGAGCACCCGA ACTCCAGCGCATTGCCCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MPRSTRLSARAAALCAITLAGAPGALPSIHAQTWPDKPITIVVPYPAGGSNDSFARQLAKELGDRLQQPVIIDNRPGASG NTGTGQVAKAAADGYTLVAVSASFATNAAVQSRLPYDPGKSFTPVALFAKGPLIVAVNPEFPARTPAELIAAIRARPGLY NYASSGAGSVNQFATELLKAQLSGLDIRHIPYRGMAPAVTDLIGNQTQLLIASGPSLLPMVRAGKLRAVGITSLEPSPIA PELLPLASSVPGYAFELWWGLLAPAGTPADVVGKLNQAVNQTLAKPQIAGNFLKEGAIATPLSPAQFGALIASDVERWKK LARQQGIAAD
Sequences:
>Translated_330_residues MPRSTRLSARAAALCAITLAGAPGALPSIHAQTWPDKPITIVVPYPAGGSNDSFARQLAKELGDRLQQPVIIDNRPGASG NTGTGQVAKAAADGYTLVAVSASFATNAAVQSRLPYDPGKSFTPVALFAKGPLIVAVNPEFPARTPAELIAAIRARPGLY NYASSGAGSVNQFATELLKAQLSGLDIRHIPYRGMAPAVTDLIGNQTQLLIASGPSLLPMVRAGKLRAVGITSLEPSPIA PELLPLASSVPGYAFELWWGLLAPAGTPADVVGKLNQAVNQTLAKPQIAGNFLKEGAIATPLSPAQFGALIASDVERWKK LARQQGIAAD >Mature_329_residues PRSTRLSARAAALCAITLAGAPGALPSIHAQTWPDKPITIVVPYPAGGSNDSFARQLAKELGDRLQQPVIIDNRPGASGN TGTGQVAKAAADGYTLVAVSASFATNAAVQSRLPYDPGKSFTPVALFAKGPLIVAVNPEFPARTPAELIAAIRARPGLYN YASSGAGSVNQFATELLKAQLSGLDIRHIPYRGMAPAVTDLIGNQTQLLIASGPSLLPMVRAGKLRAVGITSLEPSPIAP ELLPLASSVPGYAFELWWGLLAPAGTPADVVGKLNQAVNQTLAKPQIAGNFLKEGAIATPLSPAQFGALIASDVERWKKL ARQQGIAAD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34159; Mature: 34027
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRSTRLSARAAALCAITLAGAPGALPSIHAQTWPDKPITIVVPYPAGGSNDSFARQLAK CCCCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH ELGDRLQQPVIIDNRPGASGNTGTGQVAKAAADGYTLVAVSASFATNAAVQSRLPYDPGK HHHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCCCC SFTPVALFAKGPLIVAVNPEFPARTPAELIAAIRARPGLYNYASSGAGSVNQFATELLKA CCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH QLSGLDIRHIPYRGMAPAVTDLIGNQTQLLIASGPSLLPMVRAGKLRAVGITSLEPSPIA HHCCCCEEECCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEEEECCCCCCCCC PELLPLASSVPGYAFELWWGLLAPAGTPADVVGKLNQAVNQTLAKPQIAGNFLKEGAIAT HHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC PLSPAQFGALIASDVERWKKLARQQGIAAD CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PRSTRLSARAAALCAITLAGAPGALPSIHAQTWPDKPITIVVPYPAGGSNDSFARQLAK CCCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH ELGDRLQQPVIIDNRPGASGNTGTGQVAKAAADGYTLVAVSASFATNAAVQSRLPYDPGK HHHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCCCC SFTPVALFAKGPLIVAVNPEFPARTPAELIAAIRARPGLYNYASSGAGSVNQFATELLKA CCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH QLSGLDIRHIPYRGMAPAVTDLIGNQTQLLIASGPSLLPMVRAGKLRAVGITSLEPSPIA HHCCCCEEECCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEEEECCCCCCCCC PELLPLASSVPGYAFELWWGLLAPAGTPADVVGKLNQAVNQTLAKPQIAGNFLKEGAIAT HHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC PLSPAQFGALIASDVERWKKLARQQGIAAD CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3299368 [H]