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The map label for this gene is yfdE [H]

Identifier: 121609994

GI number: 121609994

Start: 3403026

End: 3404222

Strand: Direct

Name: yfdE [H]

Synonym: Veis_3050

Alternate gene names: 121609994

Gene position: 3403026-3404222 (Clockwise)

Preceding gene: 121609993

Following gene: 121609997

Centisome position: 61.13

GC content: 69.01

Gene sequence:

>1197_bases
ATGCCCCTTGCCCCCGAGCACCCGAACTCCAGCGCATTGCCCCTGCGCAGCGGCCCCCAAGGCCCGCTCAGTGGTCTGCG
GGTGCTCGATCTGAGCGCCTACATCGCCGGGCCCTATGGCTGCGCCTTGCTGGCCGATCAAGGCGCCGAGGTCATCAAGA
TCGAGCCGCCCACGGGCGACAACCTGCGCCAATACCCCTCGACACTGGCGGCCGAGAGCCGCGCCTTCGTCGGCGTGAAC
CGCAGCAAGATCGGCATGGTGCTGGACCTCAAGCAGCCCGCCGACCATGCATTGCTGATGGCGCTGGTGCGCACGGCCGA
TGTGCTGGTGCACAACTTTCGCCCCGGCGTGCCACAGCGCCTGGGCATTGCGTATGAGCAACTGCGGCCGCTCAATCCAC
GCCTCGTCCATTGCAGCGTCACCGGCTATGGCGAGAGCGGACCGCTCAAGGACAAGGCCGGCTATGACCAGGTGCTGCAG
ACCATGACCGGCATGTGCACGCTGCAAGGCAAGCGGGGCCAGCCGCCCGAGATCCTCTACGGCTCGGTCGTGGACTACCA
CGCATCGGCCCTGGTGGCGGCGGGCGTGGCCTCGGCGCTGTACGAGCGCGAGCGCAGCGGCCAGGGCCAGCGGGTGGGCA
TCTCGCTGCTGCGCACCGCGCTGGCCATGCAGTCGGCGCGGCTGGTCTGGGCCGAAGGCGAACCCCGGGACATGGGGCGC
GACATGCGTTCGGGCGGCATCACCGGCATCCACCCGACCAAGGAGGGCTATCTCTACATCTCAGCCAACACGCCCCATTT
CTGGAGCGCGCTGTGTGACAAGGTGGGCCTGCCCGAACTGGCCGCCAACCAGCGCTACGACTCGGTGCGCAAACGCGCCC
GGCATGTCGCCGAACTCCTGCCCCGGTTGCACCAAGCCCTGGCGGCACGCAGCGCGCTCGAATGGGAGGCACTGTTCGGC
CAGGCCGTGCCCTGCGCCGCAGCGCGCACCACAGAAGACATGTTCGATCACCCGCAGGTCATCGCCGAGGACATGCTGGC
CCACTTCACCCACCCGGTGCTGGGCAGCTACCGGGGCTTCACACGCGCGATCCGCTTCGAGCGCACGCCAGGCCCCGATC
CATTCGCTGCGCCCACCCTGGGCCAGCATACCGAGGCCATGCGTGCCGTAGCCGCCACAGCCGCCACAGGCGCCTGA

Upstream 100 bases:

>100_bases
CGCTGGAAGAAACTGGCCAGGCAACAGGGCATTGCGGCGGATTGATCGGTGCCCACCCACAGAGGTGTCCAGCCACTTTT
TCCGCCCTTCGGAGAATCCC

Downstream 100 bases:

>100_bases
TGCGCGGGGCCATGGCGATTCCGAACCGCACCGGCATCGCGCGACCCGCCACCGCAGCGTCGGACATCGACGCTGCGTCT
TCAAATTGGAAAACCAGACG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MPLAPEHPNSSALPLRSGPQGPLSGLRVLDLSAYIAGPYGCALLADQGAEVIKIEPPTGDNLRQYPSTLAAESRAFVGVN
RSKIGMVLDLKQPADHALLMALVRTADVLVHNFRPGVPQRLGIAYEQLRPLNPRLVHCSVTGYGESGPLKDKAGYDQVLQ
TMTGMCTLQGKRGQPPEILYGSVVDYHASALVAAGVASALYERERSGQGQRVGISLLRTALAMQSARLVWAEGEPRDMGR
DMRSGGITGIHPTKEGYLYISANTPHFWSALCDKVGLPELAANQRYDSVRKRARHVAELLPRLHQALAARSALEWEALFG
QAVPCAAARTTEDMFDHPQVIAEDMLAHFTHPVLGSYRGFTRAIRFERTPGPDPFAAPTLGQHTEAMRAVAATAATGA

Sequences:

>Translated_398_residues
MPLAPEHPNSSALPLRSGPQGPLSGLRVLDLSAYIAGPYGCALLADQGAEVIKIEPPTGDNLRQYPSTLAAESRAFVGVN
RSKIGMVLDLKQPADHALLMALVRTADVLVHNFRPGVPQRLGIAYEQLRPLNPRLVHCSVTGYGESGPLKDKAGYDQVLQ
TMTGMCTLQGKRGQPPEILYGSVVDYHASALVAAGVASALYERERSGQGQRVGISLLRTALAMQSARLVWAEGEPRDMGR
DMRSGGITGIHPTKEGYLYISANTPHFWSALCDKVGLPELAANQRYDSVRKRARHVAELLPRLHQALAARSALEWEALFG
QAVPCAAARTTEDMFDHPQVIAEDMLAHFTHPVLGSYRGFTRAIRFERTPGPDPFAAPTLGQHTEAMRAVAATAATGA
>Mature_397_residues
PLAPEHPNSSALPLRSGPQGPLSGLRVLDLSAYIAGPYGCALLADQGAEVIKIEPPTGDNLRQYPSTLAAESRAFVGVNR
SKIGMVLDLKQPADHALLMALVRTADVLVHNFRPGVPQRLGIAYEQLRPLNPRLVHCSVTGYGESGPLKDKAGYDQVLQT
MTGMCTLQGKRGQPPEILYGSVVDYHASALVAAGVASALYERERSGQGQRVGISLLRTALAMQSARLVWAEGEPRDMGRD
MRSGGITGIHPTKEGYLYISANTPHFWSALCDKVGLPELAANQRYDSVRKRARHVAELLPRLHQALAARSALEWEALFGQ
AVPCAAARTTEDMFDHPQVIAEDMLAHFTHPVLGSYRGFTRAIRFERTPGPDPFAAPTLGQHTEAMRAVAATAATGA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=370, Percent_Identity=30, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI300863124, Length=396, Percent_Identity=28.030303030303, Blast_Score=173, Evalue=3e-43,
Organism=Homo sapiens, GI300863126, Length=366, Percent_Identity=28.4153005464481, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI13376042, Length=396, Percent_Identity=25.7575757575758, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI42794625, Length=388, Percent_Identity=26.8041237113402, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI266456254, Length=388, Percent_Identity=26.8041237113402, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=30.9433962264151, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=31.1538461538462, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=35.6643356643357, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=35.9154929577465, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI87082093, Length=332, Percent_Identity=32.8313253012048, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1788717, Length=398, Percent_Identity=25.8793969849246, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786222, Length=383, Percent_Identity=24.0208877284595, Blast_Score=76, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=371, Percent_Identity=23.7196765498652, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=197, Percent_Identity=30.9644670050761, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648431, Length=374, Percent_Identity=32.620320855615, Blast_Score=188, Evalue=7e-48,
Organism=Drosophila melanogaster, GI24585488, Length=315, Percent_Identity=29.2063492063492, Blast_Score=129, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42892; Mature: 42760

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00052 RIBOSOMAL_S7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLAPEHPNSSALPLRSGPQGPLSGLRVLDLSAYIAGPYGCALLADQGAEVIKIEPPTGD
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEECCCCCEEEECCCCCC
NLRQYPSTLAAESRAFVGVNRSKIGMVLDLKQPADHALLMALVRTADVLVHNFRPGVPQR
CHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
LGIAYEQLRPLNPRLVHCSVTGYGESGPLKDKAGYDQVLQTMTGMCTLQGKRGQPPEILY
HHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCHHEE
GSVVDYHASALVAAGVASALYERERSGQGQRVGISLLRTALAMQSARLVWAEGEPRDMGR
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECCCCHHHCC
DMRSGGITGIHPTKEGYLYISANTPHFWSALCDKVGLPELAANQRYDSVRKRARHVAELL
HHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHH
PRLHQALAARSALEWEALFGQAVPCAAARTTEDMFDHPQVIAEDMLAHFTHPVLGSYRGF
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TRAIRFERTPGPDPFAAPTLGQHTEAMRAVAATAATGA
HHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PLAPEHPNSSALPLRSGPQGPLSGLRVLDLSAYIAGPYGCALLADQGAEVIKIEPPTGD
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEECCCCCEEEECCCCCC
NLRQYPSTLAAESRAFVGVNRSKIGMVLDLKQPADHALLMALVRTADVLVHNFRPGVPQR
CHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
LGIAYEQLRPLNPRLVHCSVTGYGESGPLKDKAGYDQVLQTMTGMCTLQGKRGQPPEILY
HHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCHHEE
GSVVDYHASALVAAGVASALYERERSGQGQRVGISLLRTALAMQSARLVWAEGEPRDMGR
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECCCCHHHCC
DMRSGGITGIHPTKEGYLYISANTPHFWSALCDKVGLPELAANQRYDSVRKRARHVAELL
HHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHH
PRLHQALAARSALEWEALFGQAVPCAAARTTEDMFDHPQVIAEDMLAHFTHPVLGSYRGF
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TRAIRFERTPGPDPFAAPTLGQHTEAMRAVAATAATGA
HHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]