Definition | Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence. |
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Accession | NC_008762 |
Length | 21,611 |
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The map label for this gene is mobA [H]
Identifier: 121583553
GI number: 121583553
Start: 7158
End: 9689
Strand: Reverse
Name: mobA [H]
Synonym: Pnap_4982
Alternate gene names: 121583553
Gene position: 9689-7158 (Counterclockwise)
Preceding gene: 121583554
Following gene: 121583552
Centisome position: 44.83
GC content: 57.62
Gene sequence:
>2532_bases ATGGAGAAATGCATCCACCACGAAGCCGACAACTTTCTGACTGACACGCACGAAGGCCACGTTGCCGAAATGATTGCACT GGCTCAAGATGCCGTCAGGTCTAAAGACCCAATAGACCATTGGGTTTTAAGCTGGCGACCGAACGAGCGCCCGAGCGTTG ACCAAGTGCGCGAAGCCGTGAAAATGTTTGTTGGCCATTGCGGTCTGACCGGCCACCAGGTGATCTGGGGACTGCACGAC GACACCAAGAACCTGCACGTTCACATTGCTGTTAACCGCGTGCATCCTGACACGCTTAAGGTTATCGAAATCAACAAAGG GTTTCAACTCAATGCTGCCCACCAAGCCATTGCAATCATCGAAAAAAAGCAGGGCTGGAAAAGTGTCGAGAACGCACGGT ATCAAACCAACGACAACGGCGAGTTGCTCGCCGATAGCAAGACCAAACGGCCAGCAGTCAACAAAGCCAAAGACAAGCCG CTAGAGCCAACTGGCCCCGCGCAAGACATGGAAATTCAGACCGGGCAGAAATCGGCCCAGCGTATCGGCATTGAAAACGC CGCCCCGATCATTGCAAAGGCCAGCAGTTGGAAAGACCTGCACACCCAAATGGCAGCAGCCGGGCTTGAATATCGCCGCG AAGGTTCAGGCGCAAAAGTTTATGTCGGTGACATTGGAGTCAAGGCCAGTGACATAGACCGAAAAGCCAGCTTCGGAAAT TTACAAAAACGTTTCGGCCCCTATCAACCACCCCAGGAAATTAAACCCAATGAATACCACCATCACACCCCGCAGCCGTA CCCTACTGCGATTAGAGATACAGCCACAAACGGTCTGCGCAAACTGTCCGAATGCAATCTGGCAGTCCTTAAAAATCAAG GTCAAACCCGGCGCAAGGGTGTACTGCACGTTGATGCATGTCCTGGTGGACGACCTGTTGACGGACTGCGACGGGTTGCC GGACGAGACAACAGCACCGGCCTAACCCCGCAGCCAATGCGTCAAGGGCAACCCGGTTGGAATGAATACATTGCCATCCG TGACGCTCATAAAGCGGCCAAAACGCACGACACCATCGAGCTACAGAAACGCCACGGAGCCGAGCGGGCAGCGCTCCTGG CGAAGCTCAAAACAGAGCGCACCGAAGCACTGAGCGGAAATTGGCAAGACAAAGGCCCACAGCGCAACGCATTGCAGAGC CTGTTAGCACCCCTGCAAGCCGCCGAAAAGCTGGAGCTATCCGAGCGACACCGAGCCGAGCGCAAAGCGTTGCAGGCCCA ATACAAGCCGTTGCCGATGTATCGACAGTGGAAAGAACAGCCGCAAATTGTCAGCCTGCACGTCCTGCCAGTCACGGAGC GAAGCACAGCAACGAGCACAGTGGCAAGCACACTCAGAGCGCTCACGAGCACGGTCGATGCACGCAAGCACATCACTTAC CAACTTGCCCAAAAAGACGTTTTCAGAGATGAGGGCCGAAGCATTCAGATTTTGGACTTGAAATCAGACCGTGGCATTGC TGCCGCCCTTGCGACCGCGCAACAGAAATTCGGGCAAACGCTCGAACTCACCGGCTCTGACGAATTCAAGAAAAACGCCG TGGCCGTGGCCGTGGCCAACGGTTTGACCTGCAAGTTTGCAGACCCGCAGCTTGACAAACTGCGCGAGCAGTTGCAGCAG CAGAAGTACGAAGCAGCACGGGAAGCCGCCCGCGCCGAGCGCGACCGCGCAGCCGCTGCACAGCTTGAGAAATCCAAGGA ACCCGCCCCCCTGCATTCTCCATCCAACAACCCCGGCGAAGCCGTGTCTCTGGATTCTGGACCCCAGACCCTGGACCCCG CGCCGGAGGCGCAGCCGATTGAGTTGGAGTTGGATATGAAGGGGCTTGTCACAGACCGTGAACGCGAGCTTGTGCAGCGC ATCGACGCAGCGATCAAAGCCAATGACAGCGCAGAGTTGCAGTCGTGCATGGATGCTTTTGGGGGCGTTAGAAATGAAGC CGCAAAAGCGCTGGGCGCAGTGGCCCCGCAGGAAGTGAATCGGGCAGCAATCGCGCACCAGGTCAAAACCGAGCAGAACG CCGCCGCCGCAAAACGGGGCGACCCGGAGCCTTGGTACGTGAGTGGGATTGGGTCAAAAACAGGCGCTTGCGCTTGGGAC GCAATCACCGCCAAGGCATGCGCAGAGCGCGATACACACGCCGGGACGCAGCGCCCGACAGGCATGTTCAAAGGAGCCGA AGGCAAGGCATGGGATGAGCGCAGCGCCGATCTATCGGCCAAGGCCACAGGCTGGGCCAAAGCCGCCGAAGGCATCAAGC GCGAGCTTGCATTGACCACCGAGCAGCGTGTGACCAAGGAAGCCGAGGCCGTGACAGCAAGTAACCGCAAAAACACCGCA CAGCACGCCAAGCAGCTTGAGCGGTACGAGAGCCTGGCCGTGGCGGAAAAGCGCCTAGAAACCGCCTTGCAGCCTCATAA AGAGCGCGAGCGCGAGCTTGCGCGGGAAAACAGCAGGGGCCAAGGTCTCTAA
Upstream 100 bases:
>100_bases GATCGTCAAAAAGATACCCAACAAAAAAGCGGGAGGTACAAAATCCGCCCGTGTTGCTGGCGTTGCAAACTATATTGTTG AACCGCAGCGTGAAAACGGC
Downstream 100 bases:
>100_bases ATTTAATTTCTAAAAATAACAAAAGATAATGTTATCTGTTATGATTACGTTATTATTATAAATAATACATAACAAAAGGA TAACATCATGGCAATCGTTA
Product: relaxase/mobilization nuclease family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 843; Mature: 843
Protein sequence:
>843_residues MEKCIHHEADNFLTDTHEGHVAEMIALAQDAVRSKDPIDHWVLSWRPNERPSVDQVREAVKMFVGHCGLTGHQVIWGLHD DTKNLHVHIAVNRVHPDTLKVIEINKGFQLNAAHQAIAIIEKKQGWKSVENARYQTNDNGELLADSKTKRPAVNKAKDKP LEPTGPAQDMEIQTGQKSAQRIGIENAAPIIAKASSWKDLHTQMAAAGLEYRREGSGAKVYVGDIGVKASDIDRKASFGN LQKRFGPYQPPQEIKPNEYHHHTPQPYPTAIRDTATNGLRKLSECNLAVLKNQGQTRRKGVLHVDACPGGRPVDGLRRVA GRDNSTGLTPQPMRQGQPGWNEYIAIRDAHKAAKTHDTIELQKRHGAERAALLAKLKTERTEALSGNWQDKGPQRNALQS LLAPLQAAEKLELSERHRAERKALQAQYKPLPMYRQWKEQPQIVSLHVLPVTERSTATSTVASTLRALTSTVDARKHITY QLAQKDVFRDEGRSIQILDLKSDRGIAAALATAQQKFGQTLELTGSDEFKKNAVAVAVANGLTCKFADPQLDKLREQLQQ QKYEAAREAARAERDRAAAAQLEKSKEPAPLHSPSNNPGEAVSLDSGPQTLDPAPEAQPIELELDMKGLVTDRERELVQR IDAAIKANDSAELQSCMDAFGGVRNEAAKALGAVAPQEVNRAAIAHQVKTEQNAAAAKRGDPEPWYVSGIGSKTGACAWD AITAKACAERDTHAGTQRPTGMFKGAEGKAWDERSADLSAKATGWAKAAEGIKRELALTTEQRVTKEAEAVTASNRKNTA QHAKQLERYESLAVAEKRLETALQPHKERERELARENSRGQGL
Sequences:
>Translated_843_residues MEKCIHHEADNFLTDTHEGHVAEMIALAQDAVRSKDPIDHWVLSWRPNERPSVDQVREAVKMFVGHCGLTGHQVIWGLHD DTKNLHVHIAVNRVHPDTLKVIEINKGFQLNAAHQAIAIIEKKQGWKSVENARYQTNDNGELLADSKTKRPAVNKAKDKP LEPTGPAQDMEIQTGQKSAQRIGIENAAPIIAKASSWKDLHTQMAAAGLEYRREGSGAKVYVGDIGVKASDIDRKASFGN LQKRFGPYQPPQEIKPNEYHHHTPQPYPTAIRDTATNGLRKLSECNLAVLKNQGQTRRKGVLHVDACPGGRPVDGLRRVA GRDNSTGLTPQPMRQGQPGWNEYIAIRDAHKAAKTHDTIELQKRHGAERAALLAKLKTERTEALSGNWQDKGPQRNALQS LLAPLQAAEKLELSERHRAERKALQAQYKPLPMYRQWKEQPQIVSLHVLPVTERSTATSTVASTLRALTSTVDARKHITY QLAQKDVFRDEGRSIQILDLKSDRGIAAALATAQQKFGQTLELTGSDEFKKNAVAVAVANGLTCKFADPQLDKLREQLQQ QKYEAAREAARAERDRAAAAQLEKSKEPAPLHSPSNNPGEAVSLDSGPQTLDPAPEAQPIELELDMKGLVTDRERELVQR IDAAIKANDSAELQSCMDAFGGVRNEAAKALGAVAPQEVNRAAIAHQVKTEQNAAAAKRGDPEPWYVSGIGSKTGACAWD AITAKACAERDTHAGTQRPTGMFKGAEGKAWDERSADLSAKATGWAKAAEGIKRELALTTEQRVTKEAEAVTASNRKNTA QHAKQLERYESLAVAEKRLETALQPHKERERELARENSRGQGL >Mature_843_residues MEKCIHHEADNFLTDTHEGHVAEMIALAQDAVRSKDPIDHWVLSWRPNERPSVDQVREAVKMFVGHCGLTGHQVIWGLHD DTKNLHVHIAVNRVHPDTLKVIEINKGFQLNAAHQAIAIIEKKQGWKSVENARYQTNDNGELLADSKTKRPAVNKAKDKP LEPTGPAQDMEIQTGQKSAQRIGIENAAPIIAKASSWKDLHTQMAAAGLEYRREGSGAKVYVGDIGVKASDIDRKASFGN LQKRFGPYQPPQEIKPNEYHHHTPQPYPTAIRDTATNGLRKLSECNLAVLKNQGQTRRKGVLHVDACPGGRPVDGLRRVA GRDNSTGLTPQPMRQGQPGWNEYIAIRDAHKAAKTHDTIELQKRHGAERAALLAKLKTERTEALSGNWQDKGPQRNALQS LLAPLQAAEKLELSERHRAERKALQAQYKPLPMYRQWKEQPQIVSLHVLPVTERSTATSTVASTLRALTSTVDARKHITY QLAQKDVFRDEGRSIQILDLKSDRGIAAALATAQQKFGQTLELTGSDEFKKNAVAVAVANGLTCKFADPQLDKLREQLQQ QKYEAAREAARAERDRAAAAQLEKSKEPAPLHSPSNNPGEAVSLDSGPQTLDPAPEAQPIELELDMKGLVTDRERELVQR IDAAIKANDSAELQSCMDAFGGVRNEAAKALGAVAPQEVNRAAIAHQVKTEQNAAAAKRGDPEPWYVSGIGSKTGACAWD AITAKACAERDTHAGTQRPTGMFKGAEGKAWDERSADLSAKATGWAKAAEGIKRELALTTEQRVTKEAEAVTASNRKNTA QHAKQLERYESLAVAEKRLETALQPHKERERELARENSRGQGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005094 [H]
Pfam domain/function: PF03432 Relaxase [H]
EC number: NA
Molecular weight: Translated: 92749; Mature: 92749
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKCIHHEADNFLTDTHEGHVAEMIALAQDAVRSKDPIDHWVLSWRPNERPSVDQVREAV CCCHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCHHHHHHHH KMFVGHCGLTGHQVIWGLHDDTKNLHVHIAVNRVHPDTLKVIEINKGFQLNAAHQAIAII HHHHHHCCCCCCCEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCEECHHHHHHHHH EKKQGWKSVENARYQTNDNGELLADSKTKRPAVNKAKDKPLEPTGPAQDMEIQTGQKSAQ HHHCCHHHHHCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHH RIGIENAAPIIAKASSWKDLHTQMAAAGLEYRREGSGAKVYVGDIGVKASDIDRKASFGN HCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHH LQKRFGPYQPPQEIKPNEYHHHTPQPYPTAIRDTATNGLRKLSECNLAVLKNQGQTRRKG HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCHHHCC VLHVDACPGGRPVDGLRRVAGRDNSTGLTPQPMRQGQPGWNEYIAIRDAHKAAKTHDTIE EEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHEEEEECHHHHHHHHHHHH LQKRHGAERAALLAKLKTERTEALSGNWQDKGPQRNALQSLLAPLQAAEKLELSERHRAE HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RKALQAQYKPLPMYRQWKEQPQIVSLHVLPVTERSTATSTVASTLRALTSTVDARKHITY HHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QLAQKDVFRDEGRSIQILDLKSDRGIAAALATAQQKFGQTLELTGSDEFKKNAVAVAVAN HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHCEEEEEEEC GLTCKFADPQLDKLREQLQQQKYEAAREAARAERDRAAAAQLEKSKEPAPLHSPSNNPGE CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AVSLDSGPQTLDPAPEAQPIELELDMKGLVTDRERELVQRIDAAIKANDSAELQSCMDAF EEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GGVRNEAAKALGAVAPQEVNRAAIAHQVKTEQNAAAAKRGDPEPWYVSGIGSKTGACAWD CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH AITAKACAERDTHAGTQRPTGMFKGAEGKAWDERSADLSAKATGWAKAAEGIKRELALTT HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH EQRVTKEAEAVTASNRKNTAQHAKQLERYESLAVAEKRLETALQPHKERERELARENSRG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC QGL CCC >Mature Secondary Structure MEKCIHHEADNFLTDTHEGHVAEMIALAQDAVRSKDPIDHWVLSWRPNERPSVDQVREAV CCCHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCHHHHHHHH KMFVGHCGLTGHQVIWGLHDDTKNLHVHIAVNRVHPDTLKVIEINKGFQLNAAHQAIAII HHHHHHCCCCCCCEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCEECHHHHHHHHH EKKQGWKSVENARYQTNDNGELLADSKTKRPAVNKAKDKPLEPTGPAQDMEIQTGQKSAQ HHHCCHHHHHCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHH RIGIENAAPIIAKASSWKDLHTQMAAAGLEYRREGSGAKVYVGDIGVKASDIDRKASFGN HCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHH LQKRFGPYQPPQEIKPNEYHHHTPQPYPTAIRDTATNGLRKLSECNLAVLKNQGQTRRKG HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCHHHCC VLHVDACPGGRPVDGLRRVAGRDNSTGLTPQPMRQGQPGWNEYIAIRDAHKAAKTHDTIE EEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHEEEEECHHHHHHHHHHHH LQKRHGAERAALLAKLKTERTEALSGNWQDKGPQRNALQSLLAPLQAAEKLELSERHRAE HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RKALQAQYKPLPMYRQWKEQPQIVSLHVLPVTERSTATSTVASTLRALTSTVDARKHITY HHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QLAQKDVFRDEGRSIQILDLKSDRGIAAALATAQQKFGQTLELTGSDEFKKNAVAVAVAN HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHCEEEEEEEC GLTCKFADPQLDKLREQLQQQKYEAAREAARAERDRAAAAQLEKSKEPAPLHSPSNNPGE CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AVSLDSGPQTLDPAPEAQPIELELDMKGLVTDRERELVQRIDAAIKANDSAELQSCMDAF EEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GGVRNEAAKALGAVAPQEVNRAAIAHQVKTEQNAAAAKRGDPEPWYVSGIGSKTGACAWD CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH AITAKACAERDTHAGTQRPTGMFKGAEGKAWDERSADLSAKATGWAKAAEGIKRELALTT HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH EQRVTKEAEAVTASNRKNTAQHAKQLERYESLAVAEKRLETALQPHKERERELARENSRG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC QGL CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1400173 [H]