Definition Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence.
Accession NC_008762
Length 21,611

Click here to switch to the map view.

The map label for this gene is 121583551

Identifier: 121583551

GI number: 121583551

Start: 5343

End: 5972

Strand: Reverse

Name: 121583551

Synonym: Pnap_4980

Alternate gene names: NA

Gene position: 5972-5343 (Counterclockwise)

Preceding gene: 121583552

Following gene: 121583550

Centisome position: 27.63

GC content: 57.14

Gene sequence:

>630_bases
ATGATTTTTGGTGTATTGAATCAAAAAGGGGGCGTCGGCAAAACGACCCTCAGCGTCAACCTTGCGGCCTGCTTTGCACG
CGCTGGTGCGCGTGTCCTGTTGATCGACGCCGACCCCCAGGGAAGCGCCCTCGATTGGGCCGCAGCCCGTCAAGGACCGC
CCCTCTTTTCTGTTGTCGGATTCCCCCGCGCCACCATCCACAAGGAAATCAGCCAACTTGGCCAAGGCTATGACCACATC
ATCATCGATGGCCCGCCACGAGTCACCGACCTGGCCCGGTCCGCCATCATGGCCTCTGATGTCGTTGTCATCCCGGTCCA
GCCGAGCCCTTATGACATCTGGGCGGCCGAAGAAGTTGTGAAGCTGATCGCGGAGGCTCACATATATAAAGAAAATATCA
AATCCGTGTTTGTGGTAAATCGCAAAATTACAAATACGGCAATAGGGCGCGACGTGCGCGATGCCCTTGCTGCTTACCCG
ATCCGCGTCCTGGATGCCAGCGTGGCTCAGCGGGTTGTTTTTGCCGAAGCTGCGGCCCAGGGTCAAGCTATTTTTGAAAT
TGATCCTGCCGGTCCTGCCGTTGCCGAGATCGAGGCTGTTGCAGCCGAGCTGATGGAGTACGCCAAATGA

Upstream 100 bases:

>100_bases
ACCCGAGCCAGGGAAAGGCAAAGACAAGGGACGAGGTTGATTGCTTTATTTAAGGTTTTCTGTAAAAGTACAAAAATACA
AAACAGTAAAAGGTGAAATC

Downstream 100 bases:

>100_bases
GCACCAAGAAAATCGCTTTCGGGACCAAGCCGACCAACAAACCAGAACCGGCCCCGGTTGATTCGTGGGTGGAGAATCGC
GCCGCTGGCGAGGCCGAAGC

Product: cobyrinic acid a,c-diamide synthase

Products: NA

Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition Protein; ParA Family Protein; ParA-Like Protein; Plasmid Partitioning Protein; Plasmid Partition Protein ParA; ParA Protein; Partition-Related Protein; Plasmid Partition Protein ParA-Like Protein; Partitioning Protein; Partitioning Protein ParA; Partition Protein A; ATPases Involved In Chromosome Partitioning; CobQ/CobB/MinD/ParA Domain-Containing Protein; Plasmid Partitioning-Family Protein; ATPases Involved In Chromosome Partitioning-Like Protein; Plasmid Partition Protein; Chromosome Partitioning ATPase; ATPase ParA Type; ATPase; PARA Protein; Plasmid Stability Protein ParA; Plasmid Partitioning Protein F; ParA Family Chromosome Partitioning ATPase; Plasmid Partition Protein ParF; ParA Partitioning Protein; Partitioning Protein ParA Family; Plasmid Partitioning Protein ParA; Chromosome Partitioning ATPase ParA; Plasmid Partition ATPase; Chromosome Partitioning; ATPase Involved In Chromosome Partitioning-Like Protein; Plasmid Partition Protein Homolog ParA; Partition Protein ParA-Like Protein; Stability/Partitioning Determinant; MinD/ParA Family ATPase; ParA Partitioning-Like Protein; Chromosome Partitioning Protein ParA; Plasmid Partitioning-Like Protein; Partitioning Protein ParA-Family; ParA Plasmid Partitioning Protein; Chromosome Partition Protein ParA; Chmomosome Partition Protein A; Chromosome Segregation ATPase

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MIFGVLNQKGGVGKTTLSVNLAACFARAGARVLLIDADPQGSALDWAAARQGPPLFSVVGFPRATIHKEISQLGQGYDHI
IIDGPPRVTDLARSAIMASDVVVIPVQPSPYDIWAAEEVVKLIAEAHIYKENIKSVFVVNRKITNTAIGRDVRDALAAYP
IRVLDASVAQRVVFAEAAAQGQAIFEIDPAGPAVAEIEAVAAELMEYAK

Sequences:

>Translated_209_residues
MIFGVLNQKGGVGKTTLSVNLAACFARAGARVLLIDADPQGSALDWAAARQGPPLFSVVGFPRATIHKEISQLGQGYDHI
IIDGPPRVTDLARSAIMASDVVVIPVQPSPYDIWAAEEVVKLIAEAHIYKENIKSVFVVNRKITNTAIGRDVRDALAAYP
IRVLDASVAQRVVFAEAAAQGQAIFEIDPAGPAVAEIEAVAAELMEYAK
>Mature_209_residues
MIFGVLNQKGGVGKTTLSVNLAACFARAGARVLLIDADPQGSALDWAAARQGPPLFSVVGFPRATIHKEISQLGQGYDHI
IIDGPPRVTDLARSAIMASDVVVIPVQPSPYDIWAAEEVVKLIAEAHIYKENIKSVFVVNRKITNTAIGRDVRDALAAYP
IRVLDASVAQRVVFAEAAAQGQAIFEIDPAGPAVAEIEAVAAELMEYAK

Specific function: Unknown

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22228; Mature: 22228

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFGVLNQKGGVGKTTLSVNLAACFARAGARVLLIDADPQGSALDWAAARQGPPLFSVVG
CEEEEECCCCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCEEEECC
FPRATIHKEISQLGQGYDHIIIDGPPRVTDLARSAIMASDVVVIPVQPSPYDIWAAEEVV
CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHH
KLIAEAHIYKENIKSVFVVNRKITNTAIGRDVRDALAAYPIRVLDASVAQRVVFAEAAAQ
HHHHHHHHHHHCCCEEEEECCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
GQAIFEIDPAGPAVAEIEAVAAELMEYAK
CCEEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIFGVLNQKGGVGKTTLSVNLAACFARAGARVLLIDADPQGSALDWAAARQGPPLFSVVG
CEEEEECCCCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCEEEECC
FPRATIHKEISQLGQGYDHIIIDGPPRVTDLARSAIMASDVVVIPVQPSPYDIWAAEEVV
CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHH
KLIAEAHIYKENIKSVFVVNRKITNTAIGRDVRDALAAYPIRVLDASVAQRVVFAEAAAQ
HHHHHHHHHHHCCCEEEEECCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
GQAIFEIDPAGPAVAEIEAVAAELMEYAK
CCEEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA