Definition Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence.
Accession NC_008762
Length 21,611

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The map label for this gene is 121583549

Identifier: 121583549

GI number: 121583549

Start: 4501

End: 4917

Strand: Reverse

Name: 121583549

Synonym: Pnap_4978

Alternate gene names: NA

Gene position: 4917-4501 (Counterclockwise)

Preceding gene: 121583550

Following gene: 121583548

Centisome position: 22.75

GC content: 57.55

Gene sequence:

>417_bases
ATGAACATGCACTCTATCCAAAATGAGGCCGACTACAAGGCCGCGCTCAAGATCGTTTCTGCTTTGGTGGACGTAGATCC
ACAACGCGGCACATTGGAGGCCGACCGCCTTGAAGCGTTGGGCTTCCTGGTGGAGGCTTATGAAAGCGGCCTTGCCAAAT
CAATGCTGCAAGGGGGAAATTTGGAGAGTGCAATGGGCCATGACGGCATCGACCATTCGCTCTACACGCTGGCCGACTAC
CCGGTGCTGGCTGCGCTGGCGCAGGAGAGGACAAGCGCAACCAAGCTGGACGGCAGGGCATGCCGTTTTCTCTACACTGA
AGCTGGGTCTCGGATGGATGGGACAACAGTGTCAGCCCAGGAGATTGCGTTCATGCGAGCGCTGGAGGTCGATGTTCGTG
GAGTCACCCCATGCTAG

Upstream 100 bases:

>100_bases
TCCCGGTGACTGCGAAGATCGGGACCATAGGGATATATCGACTTGATGCCGGTGGGCTGCGCCTCGTTCGACGGTTGACA
GGGGTTAAGTTGGAGCAGAC

Downstream 100 bases:

>100_bases
TTTTCCTCGACACCGAATTCACCGAATTTGTCCGGCCCGACCTAATCAGCATTGCGCTTGTGAGTGAGGATGGCCGGGAA
TTCTATGCCGAGCGAACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNMHSIQNEADYKAALKIVSALVDVDPQRGTLEADRLEALGFLVEAYESGLAKSMLQGGNLESAMGHDGIDHSLYTLADY
PVLAALAQERTSATKLDGRACRFLYTEAGSRMDGTTVSAQEIAFMRALEVDVRGVTPC

Sequences:

>Translated_138_residues
MNMHSIQNEADYKAALKIVSALVDVDPQRGTLEADRLEALGFLVEAYESGLAKSMLQGGNLESAMGHDGIDHSLYTLADY
PVLAALAQERTSATKLDGRACRFLYTEAGSRMDGTTVSAQEIAFMRALEVDVRGVTPC
>Mature_138_residues
MNMHSIQNEADYKAALKIVSALVDVDPQRGTLEADRLEALGFLVEAYESGLAKSMLQGGNLESAMGHDGIDHSLYTLADY
PVLAALAQERTSATKLDGRACRFLYTEAGSRMDGTTVSAQEIAFMRALEVDVRGVTPC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14885; Mature: 14885

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMHSIQNEADYKAALKIVSALVDVDPQRGTLEADRLEALGFLVEAYESGLAKSMLQGGN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LESAMGHDGIDHSLYTLADYPVLAALAQERTSATKLDGRACRFLYTEAGSRMDGTTVSAQ
CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHECCCCCCCCCCCCHHH
EIAFMRALEVDVRGVTPC
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNMHSIQNEADYKAALKIVSALVDVDPQRGTLEADRLEALGFLVEAYESGLAKSMLQGGN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LESAMGHDGIDHSLYTLADYPVLAALAQERTSATKLDGRACRFLYTEAGSRMDGTTVSAQ
CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHECCCCCCCCCCCCHHH
EIAFMRALEVDVRGVTPC
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA