Definition Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence.
Accession NC_008762
Length 21,611

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The map label for this gene is 121583548

Identifier: 121583548

GI number: 121583548

Start: 3998

End: 4507

Strand: Reverse

Name: 121583548

Synonym: Pnap_4977

Alternate gene names: NA

Gene position: 4507-3998 (Counterclockwise)

Preceding gene: 121583549

Following gene: 121583547

Centisome position: 20.86

GC content: 57.45

Gene sequence:

>510_bases
ATGCTAGTTTTCCTCGACACCGAATTCACCGAATTTGTCCGGCCCGACCTAATCAGCATTGCGCTTGTGAGTGAGGATGG
CCGGGAATTCTATGCCGAGCGAACCGACTATTGCCAGGCCGACTGTAGCGACTTTGTGCGGGAAACCGTGCAGCCCTTGC
TGGGCCGTGTGCCTGGTGCGGCCTGTAGCCGTCCAGCGCTAACCGACCGCGTGCGAGATTGGTTCGCCCGGTTGCCAGAA
CCCGCCACCGTTATTTTTGATTATGAGTGGGACTGGTACTTGCTGGCCGTCGCCATGCTTGGGCGACCTCACAGCAAGCC
GCCCGGTGACTTTGCCAAACAACTGTATCTGAACAGCTACACCATCACGCACCCGGTTTTTGAGCGGGCGCAGAACCACA
TCTATACCCAAGACTGGCCCCCACACCATGCGCTTTCCGATGCACGGGCGCTCATGGCTGGTTATCGCGCCTGGCACAAA
TTCATGGAGCCAATCTGGAGAATTCAATGA

Upstream 100 bases:

>100_bases
TCTACACTGAAGCTGGGTCTCGGATGGATGGGACAACAGTGTCAGCCCAGGAGATTGCGTTCATGCGAGCGCTGGAGGTC
GATGTTCGTGGAGTCACCCC

Downstream 100 bases:

>100_bases
CGACGACAAACAGGAGCGCTCAATGAAAGTCAGTAACTTGATCGCACGGCTGCAGATGATGCCGCAAGAACTCGAAGTGA
TGTTGCAATGTGAAGCAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MLVFLDTEFTEFVRPDLISIALVSEDGREFYAERTDYCQADCSDFVRETVQPLLGRVPGAACSRPALTDRVRDWFARLPE
PATVIFDYEWDWYLLAVAMLGRPHSKPPGDFAKQLYLNSYTITHPVFERAQNHIYTQDWPPHHALSDARALMAGYRAWHK
FMEPIWRIQ

Sequences:

>Translated_169_residues
MLVFLDTEFTEFVRPDLISIALVSEDGREFYAERTDYCQADCSDFVRETVQPLLGRVPGAACSRPALTDRVRDWFARLPE
PATVIFDYEWDWYLLAVAMLGRPHSKPPGDFAKQLYLNSYTITHPVFERAQNHIYTQDWPPHHALSDARALMAGYRAWHK
FMEPIWRIQ
>Mature_169_residues
MLVFLDTEFTEFVRPDLISIALVSEDGREFYAERTDYCQADCSDFVRETVQPLLGRVPGAACSRPALTDRVRDWFARLPE
PATVIFDYEWDWYLLAVAMLGRPHSKPPGDFAKQLYLNSYTITHPVFERAQNHIYTQDWPPHHALSDARALMAGYRAWHK
FMEPIWRIQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19739; Mature: 19739

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFLDTEFTEFVRPDLISIALVSEDGREFYAERTDYCQADCSDFVRETVQPLLGRVPGA
CEEEECCCHHHHHCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ACSRPALTDRVRDWFARLPEPATVIFDYEWDWYLLAVAMLGRPHSKPPGDFAKQLYLNSY
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
TITHPVFERAQNHIYTQDWPPHHALSDARALMAGYRAWHKFMEPIWRIQ
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVFLDTEFTEFVRPDLISIALVSEDGREFYAERTDYCQADCSDFVRETVQPLLGRVPGA
CEEEECCCHHHHHCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ACSRPALTDRVRDWFARLPEPATVIFDYEWDWYLLAVAMLGRPHSKPPGDFAKQLYLNSY
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
TITHPVFERAQNHIYTQDWPPHHALSDARALMAGYRAWHKFMEPIWRIQ
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA