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The map label for this gene is rfbA [H]

Identifier: 120612783

GI number: 120612783

Start: 4599141

End: 4599980

Strand: Reverse

Name: rfbA [H]

Synonym: Aave_4146

Alternate gene names: 120612783

Gene position: 4599980-4599141 (Counterclockwise)

Preceding gene: 120612784

Following gene: 120612782

Centisome position: 85.94

GC content: 64.4

Gene sequence:

>840_bases
TTGCCTGGCGGGCAGCGCCCGCCGCTGATGGTTTTCTTCATGCAGACTTTACGGAACGAGTGGCGCGCCATCTGGAGCGC
CCGCTCTCTGGTATGGGTGTTGACCCTGCGCGAGGTGGCGGCACGCCATGCGGGCACCGCCGTCGGAATCCTGTGGCCTT
ATTTGCAGCCTCTGCTGACCGTCGCGGCCTACTATCTCGTTTTCGACGTGGTGTTCTCCATGCGACTGGGCAGCGGAGCT
CCCACGCATGCCGTGGGCACCTTCCTGGTCGTGGGCGCATTGCCATGGATGGCGTTCTGCGATGCCGTGTCCCGGGGCAT
GAACAGCCTGATCGAGGCGGGCGGAATGCTGCAGAAGAACCCCTTGCCGCCCGTGCTCTTCACGACACGGGCCGTGCTGG
CCAGCGGCGTCATCTTCGGACCCCTGCTGGTGCTGGTCGCGCTGGTCTATACCCCGCTGCACGGCGTGCGGCCGGCCCTT
CTGGCAATGGTTCCTCTGCTGGCGCTGCAGTTGCTTCTCTGCCTGCTCATCGGGTACCTGCTCGCGATTCTCGCGGCGGC
GTTGCGCGATACGGTGCAGATCGTGGGCTTTCTTCTGTCCGTGGGGATCTACCTCACACCGATTCTTTTCCCGCTGTCCA
TGTTTCCGGAGAACTGGCGCTGGGTGCTGTGGCTCAATCCCATGACGGCCCTGGTCATCGGGTACCAGCAGGTACTGCTG
CTGGGAGACTGGCCTCCGGCGGGTGTCTGGCTGGCGGGCGCTGCATGGCTCGTGGTGGTGGCCATGGCTTTGAATGTGGT
TGTCCGGCGCAGCCGCGACCAACTGGTGGATTGGCTATGA

Upstream 100 bases:

>100_bases
CTTTTGCAGCTGGCTACAACCCGCAGCCGGTGAAGACGGCCCCGTAACGCGTAAGCTCTGCGTTTGTGTTCGGGGCGCAG
GCCATTCGGGGTCTGTGCCG

Downstream 100 bases:

>100_bases
GCCCGCTGCAGACATCGTCCGAGACAGTGCTGCAGGTGAAGAATCTGGGCAAGGAGTACCGCATCTATGCGTCTCCCCGC
CAGCGCCTCAAGTCGCTCAT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MPGGQRPPLMVFFMQTLRNEWRAIWSARSLVWVLTLREVAARHAGTAVGILWPYLQPLLTVAAYYLVFDVVFSMRLGSGA
PTHAVGTFLVVGALPWMAFCDAVSRGMNSLIEAGGMLQKNPLPPVLFTTRAVLASGVIFGPLLVLVALVYTPLHGVRPAL
LAMVPLLALQLLLCLLIGYLLAILAAALRDTVQIVGFLLSVGIYLTPILFPLSMFPENWRWVLWLNPMTALVIGYQQVLL
LGDWPPAGVWLAGAAWLVVVAMALNVVVRRSRDQLVDWL

Sequences:

>Translated_279_residues
MPGGQRPPLMVFFMQTLRNEWRAIWSARSLVWVLTLREVAARHAGTAVGILWPYLQPLLTVAAYYLVFDVVFSMRLGSGA
PTHAVGTFLVVGALPWMAFCDAVSRGMNSLIEAGGMLQKNPLPPVLFTTRAVLASGVIFGPLLVLVALVYTPLHGVRPAL
LAMVPLLALQLLLCLLIGYLLAILAAALRDTVQIVGFLLSVGIYLTPILFPLSMFPENWRWVLWLNPMTALVIGYQQVLL
LGDWPPAGVWLAGAAWLVVVAMALNVVVRRSRDQLVDWL
>Mature_278_residues
PGGQRPPLMVFFMQTLRNEWRAIWSARSLVWVLTLREVAARHAGTAVGILWPYLQPLLTVAAYYLVFDVVFSMRLGSGAP
THAVGTFLVVGALPWMAFCDAVSRGMNSLIEAGGMLQKNPLPPVLFTTRAVLASGVIFGPLLVLVALVYTPLHGVRPALL
AMVPLLALQLLLCLLIGYLLAILAAALRDTVQIVGFLLSVGIYLTPILFPLSMFPENWRWVLWLNPMTALVIGYQQVLLL
GDWPPAGVWLAGAAWLVVVAMALNVVVRRSRDQLVDWL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30617; Mature: 30486

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PGGQRPPLMVFFMQTLRNEWRAIWSARSLVWVLTLREVAARHAGTAVGILWPYLQPLLT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VAAYYLVFDVVFSMRLGSGAPTHAVGTFLVVGALPWMAFCDAVSRGMNSLIEAGGMLQKN
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLPPVLFTTRAVLASGVIFGPLLVLVALVYTPLHGVRPALLAMVPLLALQLLLCLLIGYL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAILAAALRDTVQIVGFLLSVGIYLTPILFPLSMFPENWRWVLWLNPMTALVIGYQQVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHE
LGDWPPAGVWLAGAAWLVVVAMALNVVVRRSRDQLVDWL
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]