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The map label for this gene is atoE [H]

Identifier: 120612578

GI number: 120612578

Start: 4365262

End: 4366599

Strand: Reverse

Name: atoE [H]

Synonym: Aave_3939

Alternate gene names: 120612578

Gene position: 4366599-4365262 (Counterclockwise)

Preceding gene: 120612579

Following gene: 120612577

Centisome position: 81.58

GC content: 65.92

Gene sequence:

>1338_bases
ATGTCGAAAATCACCGCTTTCTTCACCGAACTGATGCGGCGCTACCTGCCCGATCCGTTCGTCTTCGCGATCCTGCTCAC
GCTGCTGACCATGGCGCTCGCCTTCGGCGTGGAGAGCCGCCCGATCGATGCCGTGGTGCAGGACTGGGGCAAGGGCTTCT
GGAGCCTGCTGGCCTTCACGACGCAGATGGCCGTGATCCTGGTGATGGGCTACGTGCTGGCGGCCGCGCCCATCGTGGAC
CGTTTCCTCGACCGCATCGCCGCGCGCGTGAGCACGCCGCGCCAGGCCATCATCGTCGCGACCCTCGTGGGCGGCGTGGG
CAGCTACCTCAACTGGGGCTTCGGCCTGGTGATCGGCGGCATCATGGCGCGCAAGCTGGCGCTGAAGGTGAAGGGCGTGC
ACTATCCGCTGATCATCGCGGCCGCCTACACGGGCTTCACCATGTACAGCCTGGGCTTCTCGGCGACGATCCCCGTGCTC
ATCTCCACCAAGGGCCATGCCTTCGAGGGCACGATGGGCCTGATCCCGCTCACGCAGACGATCTTCTCCGCGCCCATCCT
GCTCACCAGCCTGGCCGTGCTGGTCGCGCTGCCGCTGCTCAATGCCGCCATGCATCCCAGGCAGGGCGAGAAGGTGGTCG
AGCTGGACCCGGCCACCGTGGCGGAGGCCAGGCCCGCCGCCAGCGCAGAGGGGCTGCTGGGCGACGAGAAGACGCTGGCC
TGGCGCCTCAACAACAGCCGCATGCTGAGCCTGCTGATCGGCCTGTGCGGCATGGCGTACGTGGTCATGCACTTCGTGCG
CGGCGGCAACCTCGACCTGAACATGATCAACTTCTTCATCCTGTTCCTCGGGGTGCTGCTGCTGGGCACGCCGATGAAGT
ACGTGGAGAAGGTCAACGAGGGCGTGAAGACGATCGGCGGGATCATCCTGCAGTTCCCGTTCTACGCCGGCATCATGGCG
ATCATGCACGGCTCGGGGCTGGTGGAATCGATCGCGCACGTGTTCGTGAACATCTCCACCGCGGCCACGCTGCCGCTCTG
GGGCCTCGTCAGTTCCTTCGTGATCAACTTCTTCGCGCCCTCGGGCGGCGGCCACTGGGTGCTGCAGGGCCCGTTCATGA
TCAACGCGGCCACCACCCTCGGCGCGTCGCAGGCGCAGACGGCCATGTCGGTGATGCTGGGCAACGGCTGGAACGACCTC
GTGCAGCCGTTCTGGATCCTGCCGGCGCTGGCGCTGTCCAAGCTCAAGCTGAAAGACATCATGGGCTACACGGTGGTTTC
CATGCTGCTCGTGGGCGCCATCTACGCCGTGACCATGCTGGTCTGGCCGGACCTCTGA

Upstream 100 bases:

>100_bases
ATGACGGTAGGGGTGGCCGGGGTCTGACGGCGGCCGTTCGTCCCCCAGCTCCACCTTCGTTTTCTCAGAAATCCACACAA
CACCAAAGAGACAACTCCCC

Downstream 100 bases:

>100_bases
TCGCTTCTCCCTTTTTGTTTTCGCCTCTTCCCTTTTTCTCAAGGAGCAACCCATGCTGTTCATGGCCGAAATGACCGTCC
GCATCCCGTCCACGCTCGCC

Product: short chain fatty acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFTTQMAVILVMGYVLAAAPIVD
RFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGGIMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVL
ISTKGHAFEGTMGLIPLTQTIFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA
WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNEGVKTIGGIILQFPFYAGIMA
IMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAPSGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDL
VQPFWILPALALSKLKLKDIMGYTVVSMLLVGAIYAVTMLVWPDL

Sequences:

>Translated_445_residues
MSKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFTTQMAVILVMGYVLAAAPIVD
RFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGGIMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVL
ISTKGHAFEGTMGLIPLTQTIFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA
WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNEGVKTIGGIILQFPFYAGIMA
IMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAPSGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDL
VQPFWILPALALSKLKLKDIMGYTVVSMLLVGAIYAVTMLVWPDL
>Mature_444_residues
SKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFTTQMAVILVMGYVLAAAPIVDR
FLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGGIMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVLI
STKGHAFEGTMGLIPLTQTIFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLAW
RLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNEGVKTIGGIILQFPFYAGIMAI
MHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAPSGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDLV
QPFWILPALALSKLKLKDIMGYTVVSMLLVGAIYAVTMLVWPDL

Specific function: Responsible for the intake of short-chain fatty acids [H]

COG id: COG2031

COG function: function code I; Short chain fatty acids transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788553, Length=438, Percent_Identity=41.0958904109589, Blast_Score=350, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006161
- InterPro:   IPR006160 [H]

Pfam domain/function: PF02667 SCFA_trans [H]

EC number: NA

Molecular weight: Translated: 47860; Mature: 47729

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFT
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TQMAVILVMGYVLAAAPIVDRFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVLISTKGHAFEGTMGLIPLTQT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECEEEECCCCCCCCCCCHHHHHHH
IFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCEEE
WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNE
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GVKTIGGIILQFPFYAGIMAIMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDLVQPFWILPALALSKLKLKDI
CCCCEEEEECCEEEEHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MGYTVVSMLLVGAIYAVTMLVWPDL
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFT
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TQMAVILVMGYVLAAAPIVDRFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVLISTKGHAFEGTMGLIPLTQT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECEEEECCCCCCCCCCCHHHHHHH
IFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCEEE
WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNE
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GVKTIGGIILQFPFYAGIMAIMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDLVQPFWILPALALSKLKLKDI
CCCCEEEEECCEEEEHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MGYTVVSMLLVGAIYAVTMLVWPDL
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]