Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612537
Identifier: 120612537
GI number: 120612537
Start: 4321897
End: 4322520
Strand: Reverse
Name: 120612537
Synonym: Aave_3898
Alternate gene names: NA
Gene position: 4322520-4321897 (Counterclockwise)
Preceding gene: 120612538
Following gene: 120612531
Centisome position: 80.75
GC content: 68.59
Gene sequence:
>624_bases ATGCCCATGCACAAACGCACTCTCCTTCGCAGCGCAGCGGCCTGCGCCCTGTTCGCCGGCGCGGCGGGCCTGCTCGGGGG CTGCTCCCAGGAAAAGGCCCCGTCCTTCCAGGGCGTGGACATCACCGGCGCGGAGTACGCGCGCGACCTGCCGCTGCCCG ACCACAACGGCCAGCCGCGCCATTTGAAGGACTTCGCCGGCAAGGTGGTGGTCGTCTTCTTCGGCTATACCCAGTGCCCG GACGTCTGCCCGACCTCCATGGCCGAGCTGGCCGAGGTCAAGCGCTCGCTGGGCGCGGACGGCGACCGGCTGCAGGGCCT GTTCGTCACGGTGGACCCGGAGCGCGACACGCCCGAGGTGCTCAAGGCCTACATGACCAATTTCGATCCGGGCTTCCTCG CGCTGCGCGGCACGCCCGAGCAGCTCGCGGCCGTCGCCAAGGACTTCAAGATCTACTACAAGAAGGTGCCCGGAAAGACG CCGACCAGCTACACCATGGACCACTCTGCAGGCAGCTACATCTACGATCCGGCCGGCCGGCTGCGCGTCTATCACCGCTA CGGCAGCGGTGCTCAGGCCCTGGCGTCCGACGTCAAGGCCTTGCTGCAGGCGCCTGGCGCCTGA
Upstream 100 bases:
>100_bases TTCCGACGCGCTCGCGCGCAAGACCTTCCGCTTCTCCCTCATCCACCTGAGCCTGCTTTTCGCGGCGCTGCTGGTGGACC ATTACGTGCTCTGAACCGCC
Downstream 100 bases:
>100_bases GCGCGGAGGACGGCTCGCGCCCTGTGCCGTGGCGCGGGGCCGAGGCCATGGGCGCGGCGCCCGTGCGGCGCGTGGAAGCG TCACGCCCCCAGTGCCTGCA
Product: electron transport protein SCO1/SenC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MPMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPRHLKDFAGKVVVVFFGYTQCP DVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEVLKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKT PTSYTMDHSAGSYIYDPAGRLRVYHRYGSGAQALASDVKALLQAPGA
Sequences:
>Translated_207_residues MPMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPRHLKDFAGKVVVVFFGYTQCP DVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEVLKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKT PTSYTMDHSAGSYIYDPAGRLRVYHRYGSGAQALASDVKALLQAPGA >Mature_206_residues PMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPRHLKDFAGKVVVVFFGYTQCPD VCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEVLKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKTP TSYTMDHSAGSYIYDPAGRLRVYHRYGSGAQALASDVKALLQAPGA
Specific function: Unknown
COG id: COG1999
COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SCO1/2 family [H]
Homologues:
Organism=Homo sapiens, GI281182727, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26, Organism=Homo sapiens, GI281182722, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26, Organism=Homo sapiens, GI281182716, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26, Organism=Homo sapiens, GI153791313, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26, Organism=Homo sapiens, GI4759068, Length=154, Percent_Identity=31.8181818181818, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17531419, Length=155, Percent_Identity=29.0322580645161, Blast_Score=95, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6319498, Length=132, Percent_Identity=37.1212121212121, Blast_Score=105, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6319511, Length=132, Percent_Identity=36.3636363636364, Blast_Score=100, Evalue=1e-22, Organism=Drosophila melanogaster, GI19920710, Length=191, Percent_Identity=33.5078534031414, Blast_Score=109, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003782 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF02630 SCO1-SenC [H]
EC number: NA
Molecular weight: Translated: 22244; Mature: 22112
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC HLKDFAGKVVVVFFGYTQCPDVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEV HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHH LKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKTPTSYTMDHSAGSYIYDPAGR HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCC LRVYHRYGSGAQALASDVKALLQAPGA EEEEEECCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure PMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPR CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC HLKDFAGKVVVVFFGYTQCPDVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEV HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHH LKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKTPTSYTMDHSAGSYIYDPAGR HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCC LRVYHRYGSGAQALASDVKALLQAPGA EEEEEECCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA