Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is dosP [H]

Identifier: 120612193

GI number: 120612193

Start: 3917121

End: 3918017

Strand: Direct

Name: dosP [H]

Synonym: Aave_3545

Alternate gene names: 120612193

Gene position: 3917121-3918017 (Clockwise)

Preceding gene: 120612192

Following gene: 120612194

Centisome position: 73.18

GC content: 68.12

Gene sequence:

>897_bases
GTGCGCGCGCTGCACAAGCCGCTGGCAAGCAGCGATCTGCAGGCGATCCTGCGGGAGGTGCCGTCTCCGCCAGCGCCCGC
CGCCGACCGGCGCCGCGCCCCCCGCATGCCGATCGACGCGGCGATGCTCGAGCAGGCCATCCGGGGCGGAGGCATCACGC
CCCACTTCCAGCCGAAAGTGGACACCCGGACCGGCATGCTGCGAGGTGTCGAGGCCCTGGCGCGCTGGAACCATCCGGTC
CTGGGCATGGTGCCGCCGGACGAATTCATTCCGCTGGCCGAACGCGTGGGGCTCATCCACGAGTTGACGCTGGCCATGAT
GGAGCGCAGCTTCCTGCAGTGCGCCGCCTGGCAATCGCGCGGCATGCGGCTCACGCTGGCCATCAACCTGTCTCCGCAGT
TGCTGGCCTCGCCGGACATCGTGAACCAGATCTGCGCGCAGCAGATGCGGTACGGCCTGGCGCCTTCGCAACTGATGCTG
GAGGTCGCCGAGGGATCGATGGTGGAAACCTGCAGCGCCGCCCACTCTGCGCTGGTACGCCTGCGGCTCAAGGGGTTCGG
TTTGTCCATCGATGACTACGGCACCGGTTTCTCCTCGCTGCGGCAGCTGTCGCGCATTCCCTTCACCGAACTCAAGATAG
ACCGCTCGTTCGTGCACGGCGCCCATCGCCGGAAAAGCCTGCGGGTGATCCTGGAATCGGCGCTGGACCTCGCACGGGGA
CTCAACCTCACCACCGTGGCCGAGGGCGTGGAGCACATGGAGGACTGGCGGCTGCTGCAGGATTTCGGCTGCACCAGCGC
CCAGGGATGGCTGATCGCCAAGGCGATGCCCGGCGAGGACCTGCACTCCTGGAACCGGACCCACCGGTCGCGCCTGGACT
CCCTGCGGCTTAGCTGA

Upstream 100 bases:

>100_bases
ATGCCGTGCGGCTCTGCCACGCCCTGGGGGCCGGGCAGGTACTGGAGGCGCGCCACGGCCGCGAGGCCTGGACTCCGTCC
AGTCGCTGGGCACGTCGGTC

Downstream 100 bases:

>100_bases
CCACCGTCCCCCCATGCCAAACAGAACCATCTCCGATCGCGACTACGGGCATTTCCAGCGCTTCATCTTCGATGCGGCCG
GCATCACGCTGTCCCCGGCG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: Direct oxygen sensing phosphodiesterase; Direct oxygen sensor protein; Ec DOS; Heme-regulated cyclic di-GMP phosphodiesterase, [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKVDTRTGMLRGVEALARWNHPV
LGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSRGMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLML
EVAEGSMVETCSAAHSALVRLRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG
LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS

Sequences:

>Translated_298_residues
MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKVDTRTGMLRGVEALARWNHPV
LGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSRGMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLML
EVAEGSMVETCSAAHSALVRLRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG
LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS
>Mature_298_residues
MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKVDTRTGMLRGVEALARWNHPV
LGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSRGMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLML
EVAEGSMVETCSAAHSALVRLRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG
LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS

Specific function: In association with DosC is involved in the production and removal of the second messenger c-di-GMP in response to changing O(2) levels. Has phosphodiesterase (PDE) activity with c- di-GMP (PubMed:15995192), very poor activity on cAMP (PubMed:15995192) bu

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=261, Percent_Identity=36.7816091954023, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787541, Length=269, Percent_Identity=31.5985130111524, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=37.037037037037, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=31.8181818181818, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=34.5528455284553, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=34.297520661157, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI226510982, Length=229, Percent_Identity=36.2445414847162, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=30.9623430962343, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787055, Length=258, Percent_Identity=31.0077519379845, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87081980, Length=229, Percent_Identity=31.8777292576419, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082096, Length=212, Percent_Identity=30.188679245283, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=30.4526748971193, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=28.476821192053, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR012226
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00989 PAS; PF08448 PAS_4 [H]

EC number: =3.1.4.52 [H]

Molecular weight: Translated: 33075; Mature: 33075

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKV
CCCHHCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
DTRTGMLRGVEALARWNHPVLGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSR
CHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLMLEVAEGSMVETCSAAHSALVR
CCEEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
LRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG
HHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKV
CCCHHCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
DTRTGMLRGVEALARWNHPVLGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSR
CHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLMLEVAEGSMVETCSAAHSALVR
CCEEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
LRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG
HHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]