Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

Click here to switch to the map view.

The map label for this gene is ycaK [C]

Identifier: 120612189

GI number: 120612189

Start: 3913738

End: 3914406

Strand: Direct

Name: ycaK [C]

Synonym: Aave_3540

Alternate gene names: 120612189

Gene position: 3913738-3914406 (Clockwise)

Preceding gene: 120612187

Following gene: 120612192

Centisome position: 73.12

GC content: 67.26

Gene sequence:

>669_bases
ATGCACGCCCTCATCGTCGTCAGCCACCCCGATCCCCGGTCGCTCACCCATGCCGTCGCGCGCTCGTTTGCCGAGGGCGT
CGAAGCGCCCGGCCAGCACACCACGGAGGTGGCGGACATTGCGGCAGAGGGGTTCCAGCCTGCATTCAACCCTGCGGACC
GGGCCACGTTCTTCATGAAGGCGTCCGCCCCGCCCGACGTTCTGCGCGAGCAGGAGCGTATCGACCGGTCCGATGCGCTG
GTGCTTGTCTATCCTGTTTACTGGTGGTCGTTTCCAGGGCAGCTCAAGGGCTGGATCGACCGCGTTTTCTCCAACGGGTG
GGCCTACTCGCAAACGCCGGAAGGAGCCATCGAGAAGCGGCTCGGGCGTCTTGCGGTCCACCTGCTCGGCATCGGAGGTG
CCGACGAGGGAACGTATGCGCGGCACGGCTACGACAAGGCGCTGCGCACGCAGGTCGATCACGGCATCTTCGACTACTGC
GGCGCCAGGGTGGCCACTTCCACGATCCTCCATGGCACCGACGGCGCGAGCGCTGCATCCCACATCGCCACCGCGCGTGA
ACTGGGTCGCAACGCGTTCGCGCGACAGGTCGCCGCAGGCGGGCACCCGGCGCCTGAAATCGGCGGCAAGTTCGGGCAGG
GGGATCGCGGAGCAACGCTGGAGCAGTAA

Upstream 100 bases:

>100_bases
CGTCCGGCTTCTTCGGATGGCTTGACATGGTTAACCTACCAAAAGTAGTTTGCAGTGCTAATATACGAATGGTAATTTAA
CTTCGCCACAAGGATGTCCC

Downstream 100 bases:

>100_bases
CGCCTCGGCCCCGGGCCTGCGGCGAGGCCCGGATCATTCCAACGGCAAGGTCAATTGGAAAACGGTGCCATGTTCGTCCG
AGCGAACGACCGTCAATGTA

Product: NAD(P)H dehydrogenase (quinone)

Products: NAD+; NADP+; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MHALIVVSHPDPRSLTHAVARSFAEGVEAPGQHTTEVADIAAEGFQPAFNPADRATFFMKASAPPDVLREQERIDRSDAL
VLVYPVYWWSFPGQLKGWIDRVFSNGWAYSQTPEGAIEKRLGRLAVHLLGIGGADEGTYARHGYDKALRTQVDHGIFDYC
GARVATSTILHGTDGASAASHIATARELGRNAFARQVAAGGHPAPEIGGKFGQGDRGATLEQ

Sequences:

>Translated_222_residues
MHALIVVSHPDPRSLTHAVARSFAEGVEAPGQHTTEVADIAAEGFQPAFNPADRATFFMKASAPPDVLREQERIDRSDAL
VLVYPVYWWSFPGQLKGWIDRVFSNGWAYSQTPEGAIEKRLGRLAVHLLGIGGADEGTYARHGYDKALRTQVDHGIFDYC
GARVATSTILHGTDGASAASHIATARELGRNAFARQVAAGGHPAPEIGGKFGQGDRGATLEQ
>Mature_222_residues
MHALIVVSHPDPRSLTHAVARSFAEGVEAPGQHTTEVADIAAEGFQPAFNPADRATFFMKASAPPDVLREQERIDRSDAL
VLVYPVYWWSFPGQLKGWIDRVFSNGWAYSQTPEGAIEKRLGRLAVHLLGIGGADEGTYARHGYDKALRTQVDHGIFDYC
GARVATSTILHGTDGASAASHIATARELGRNAFARQVAAGGHPAPEIGGKFGQGDRGATLEQ

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI156564357, Length=196, Percent_Identity=26.530612244898, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1787129, Length=170, Percent_Identity=28.8235294117647, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.2

Molecular weight: Translated: 23844; Mature: 23844

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHALIVVSHPDPRSLTHAVARSFAEGVEAPGQHTTEVADIAAEGFQPAFNPADRATFFMK
CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEE
ASAPPDVLREQERIDRSDALVLVYPVYWWSFPGQLKGWIDRVFSNGWAYSQTPEGAIEKR
CCCCHHHHHHHHHCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LGRLAVHLLGIGGADEGTYARHGYDKALRTQVDHGIFDYCGARVATSTILHGTDGASAAS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCHHHHH
HIATARELGRNAFARQVAAGGHPAPEIGGKFGQGDRGATLEQ
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHALIVVSHPDPRSLTHAVARSFAEGVEAPGQHTTEVADIAAEGFQPAFNPADRATFFMK
CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEE
ASAPPDVLREQERIDRSDALVLVYPVYWWSFPGQLKGWIDRVFSNGWAYSQTPEGAIEKR
CCCCHHHHHHHHHCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LGRLAVHLLGIGGADEGTYARHGYDKALRTQVDHGIFDYCGARVATSTILHGTDGASAAS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCHHHHH
HIATARELGRNAFARQVAAGGHPAPEIGGKFGQGDRGATLEQ
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; NADPH; H+; acceptor

Specific reaction: NAD(P)H + H+ + acceptor = NAD(P)+ + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]