Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is braD [H]
Identifier: 120612150
GI number: 120612150
Start: 3867276
End: 3868856
Strand: Reverse
Name: braD [H]
Synonym: Aave_3499
Alternate gene names: 120612150
Gene position: 3868856-3867276 (Counterclockwise)
Preceding gene: 120612151
Following gene: 120612149
Centisome position: 72.28
GC content: 70.84
Gene sequence:
>1581_bases ATGTTCTCATCCCTATTTCACCGCCTGATCGCCTGCCTGCTGCTGTGCGCGGCGGCACAGGCGCATGCGCTCACGGCGGA GGCGGCGCGGGCGATGGCCGCGGGCGATACCGACGAGCGGATCGCGGCGCTGCAGCAGGCCGTGGCCGCGCCGGACGACG CCACGGTGGCCTTCATCCGCGCCATGGCCGACGATGCGGTGAAGATCGCGGGTGGCCGGGCCATCGTGGTGAAGGACGGG CAGGGCGCCGATCCCGTCACCGGCGCGCCGGTGGACGTGCCGGAGGATGCGGAGGACATCGTCAACAACAACCGCATGCG CGGCGAATTCGACACCGCGCTGGCGTCGCTGCAGCTCATGTCGCCGGATGCGGCGCAGCGCCGCGCGGCGATCGACGCGC TCAGGGACGAGAGCGACGAGGCGCGCCTGCCCCTGATCGACAAGGCCCTGGCCGCCGAGCGCGAGCCGGGGCTCAAGGCC CGGCTCGAGGCGATCCGCGCGCGCATCCAGCTCTCGGCGAGCGACCCGGCGCAGCGCCAGCTGGCGGCGCAGGCCCTGGC CGGCAGCGGCAACCCGGCCACGCGCACGGTGCTGCTGGAGCAACTGCGCAACGAACAGGACCCGAAGGTGCGCGCGGCGA TCGATTCCGCGCTGAAGGCCGTGGAAGCGCGGCTGCAGTGGGGCGAGCGCCTGGGGGCGCTGTTCTCGGGCCTCAGCCTG GGATCCATCCTGCTGCTGGTGGCGCTGGGCCTGGCCATCACCTACGGGCTGATGGGCGTCATCAACATGGCCCATGGCGA ACTCATGATGATCGGCGCCTACGCCACGTATGTGGTGCAGGGGCTGTTCCAGCGCTACCTGCCGGGCGCCTTCGATGCGT ACCTCGTCGCGGCCGTGCCGGTCGCATTCCTCGCGTCGGCGCTCATGGGCGCGGTGCTGGAGCGCGGCGTGATCCGTTTT CTCTACGGCCGGCCGCTGGAGACGCTGCTGGCCACCTGGGGCATCAGCCTGATGCTGCAGCAGTTGGTGCGCAGCGTGTT CGGCGCGCAGAACGTGGGCGTGGAAAACCCCGCCTGGATGAGCGGCGGCGTGCAGGTGCTGGAGAACCTGCAATTGCCGT GGAACCGGCTGGTGATCGTGGTGTTCGCGTTCGCCGTGCTGGGCGGCGTGGCCTTCCTCATCGGCCGCACGCGGCTGGGC CTGTTCGTGCGCGGTGTGACGCAGAACCGCCCGATCGCCTCGTGCATGGGCGTGAACACCGCGCGCGTCGATACCTATGC CTTCGCGCTGGGCTCGGGCATCGCGGGCCTGGCGGGCTGCGCCCTGAGCCAGGTGGGCAACGTGGGGCCGGACCTGGGGC AGGGCTACATCGTGGACGCCTTCATGGTGGTGGTGCTGGGCGGTGTCGGCCAGCTCGCGGGCACCGTCTATGCCGCGCTG GGGCTGGGCGTGCTCAACAAATTCCTCGAGGGCTGGGCGGGCGCGGTGCTGGCCAAGATCGCCGTGCTGGTCCTCATCAT CGTCTTCATCCAGAAGCGGCCGCAGGGCATCTTCGCGGTGAAGGGGCGCGCTGCGGACTGA
Upstream 100 bases:
>100_bases GGTTCCGCGGCGTCTGCTGGCCTGGGCCGCGCAGTGCTTGCGCCATGACGCTGACGGACATGGCTGCAGATCCTCCGTTC GCGATGTTTTTTCCTTCACC
Downstream 100 bases:
>100_bases TATGGAACACCCCCCTGTGTCGCTTCGCTCCTTCCCCCCTCTCTCGCATGGCTGCGCCCTGCGGGAGGGGGGACGCCGCC GGCGCGGCGGGGCGGCCCTT
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MFSSLFHRLIACLLLCAAAQAHALTAEAARAMAAGDTDERIAALQQAVAAPDDATVAFIRAMADDAVKIAGGRAIVVKDG QGADPVTGAPVDVPEDAEDIVNNNRMRGEFDTALASLQLMSPDAAQRRAAIDALRDESDEARLPLIDKALAAEREPGLKA RLEAIRARIQLSASDPAQRQLAAQALAGSGNPATRTVLLEQLRNEQDPKVRAAIDSALKAVEARLQWGERLGALFSGLSL GSILLLVALGLAITYGLMGVINMAHGELMMIGAYATYVVQGLFQRYLPGAFDAYLVAAVPVAFLASALMGAVLERGVIRF LYGRPLETLLATWGISLMLQQLVRSVFGAQNVGVENPAWMSGGVQVLENLQLPWNRLVIVVFAFAVLGGVAFLIGRTRLG LFVRGVTQNRPIASCMGVNTARVDTYAFALGSGIAGLAGCALSQVGNVGPDLGQGYIVDAFMVVVLGGVGQLAGTVYAAL GLGVLNKFLEGWAGAVLAKIAVLVLIIVFIQKRPQGIFAVKGRAAD
Sequences:
>Translated_526_residues MFSSLFHRLIACLLLCAAAQAHALTAEAARAMAAGDTDERIAALQQAVAAPDDATVAFIRAMADDAVKIAGGRAIVVKDG QGADPVTGAPVDVPEDAEDIVNNNRMRGEFDTALASLQLMSPDAAQRRAAIDALRDESDEARLPLIDKALAAEREPGLKA RLEAIRARIQLSASDPAQRQLAAQALAGSGNPATRTVLLEQLRNEQDPKVRAAIDSALKAVEARLQWGERLGALFSGLSL GSILLLVALGLAITYGLMGVINMAHGELMMIGAYATYVVQGLFQRYLPGAFDAYLVAAVPVAFLASALMGAVLERGVIRF LYGRPLETLLATWGISLMLQQLVRSVFGAQNVGVENPAWMSGGVQVLENLQLPWNRLVIVVFAFAVLGGVAFLIGRTRLG LFVRGVTQNRPIASCMGVNTARVDTYAFALGSGIAGLAGCALSQVGNVGPDLGQGYIVDAFMVVVLGGVGQLAGTVYAAL GLGVLNKFLEGWAGAVLAKIAVLVLIIVFIQKRPQGIFAVKGRAAD >Mature_526_residues MFSSLFHRLIACLLLCAAAQAHALTAEAARAMAAGDTDERIAALQQAVAAPDDATVAFIRAMADDAVKIAGGRAIVVKDG QGADPVTGAPVDVPEDAEDIVNNNRMRGEFDTALASLQLMSPDAAQRRAAIDALRDESDEARLPLIDKALAAEREPGLKA RLEAIRARIQLSASDPAQRQLAAQALAGSGNPATRTVLLEQLRNEQDPKVRAAIDSALKAVEARLQWGERLGALFSGLSL GSILLLVALGLAITYGLMGVINMAHGELMMIGAYATYVVQGLFQRYLPGAFDAYLVAAVPVAFLASALMGAVLERGVIRF LYGRPLETLLATWGISLMLQQLVRSVFGAQNVGVENPAWMSGGVQVLENLQLPWNRLVIVVFAFAVLGGVAFLIGRTRLG LFVRGVTQNRPIASCMGVNTARVDTYAFALGSGIAGLAGCALSQVGNVGPDLGQGYIVDAFMVVVLGGVGQLAGTVYAAL GLGVLNKFLEGWAGAVLAKIAVLVLIIVFIQKRPQGIFAVKGRAAD
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=304, Percent_Identity=27.6315789473684, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 55188; Mature: 55188
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSSLFHRLIACLLLCAAAQAHALTAEAARAMAAGDTDERIAALQQAVAAPDDATVAFIR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH AMADDAVKIAGGRAIVVKDGQGADPVTGAPVDVPEDAEDIVNNNRMRGEFDTALASLQLM HHHHCCEEEECCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHC SPDAAQRRAAIDALRDESDEARLPLIDKALAAEREPGLKARLEAIRARIQLSASDPAQRQ CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHH LAAQALAGSGNPATRTVLLEQLRNEQDPKVRAAIDSALKAVEARLQWGERLGALFSGLSL HHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSILLLVALGLAITYGLMGVINMAHGELMMIGAYATYVVQGLFQRYLPGAFDAYLVAAVP HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VAFLASALMGAVLERGVIRFLYGRPLETLLATWGISLMLQQLVRSVFGAQNVGVENPAWM HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH SGGVQVLENLQLPWNRLVIVVFAFAVLGGVAFLIGRTRLGLFVRGVTQNRPIASCMGVNT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCH ARVDTYAFALGSGIAGLAGCALSQVGNVGPDLGQGYIVDAFMVVVLGGVGQLAGTVYAAL HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH GLGVLNKFLEGWAGAVLAKIAVLVLIIVFIQKRPQGIFAVKGRAAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC >Mature Secondary Structure MFSSLFHRLIACLLLCAAAQAHALTAEAARAMAAGDTDERIAALQQAVAAPDDATVAFIR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH AMADDAVKIAGGRAIVVKDGQGADPVTGAPVDVPEDAEDIVNNNRMRGEFDTALASLQLM HHHHCCEEEECCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHC SPDAAQRRAAIDALRDESDEARLPLIDKALAAEREPGLKARLEAIRARIQLSASDPAQRQ CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHH LAAQALAGSGNPATRTVLLEQLRNEQDPKVRAAIDSALKAVEARLQWGERLGALFSGLSL HHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSILLLVALGLAITYGLMGVINMAHGELMMIGAYATYVVQGLFQRYLPGAFDAYLVAAVP HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VAFLASALMGAVLERGVIRFLYGRPLETLLATWGISLMLQQLVRSVFGAQNVGVENPAWM HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH SGGVQVLENLQLPWNRLVIVVFAFAVLGGVAFLIGRTRLGLFVRGVTQNRPIASCMGVNT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCH ARVDTYAFALGSGIAGLAGCALSQVGNVGPDLGQGYIVDAFMVVVLGGVGQLAGTVYAAL HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH GLGVLNKFLEGWAGAVLAKIAVLVLIIVFIQKRPQGIFAVKGRAAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]