Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is livM [C]
Identifier: 120612149
GI number: 120612149
Start: 3865949
End: 3867106
Strand: Reverse
Name: livM [C]
Synonym: Aave_3498
Alternate gene names: 120612149
Gene position: 3867106-3865949 (Counterclockwise)
Preceding gene: 120612150
Following gene: 120612148
Centisome position: 72.24
GC content: 66.67
Gene sequence:
>1158_bases ATGACCATTCCAAACCCCATCCCATTGCCTGCACCGGCACCGCTGCTCACGCGCGGTGGGTGGACGGGCTTCATCGTGGC GCTGATCGCGGTCTGCGCGGTGGCGCCCGTGCTCAACCTGTGGGTGCCGGCCGGCAGTGCGTTCCATCTTTCGGACTACG CTGTGGCCCTGGTCGGCAAGATCATGTGCTACGCCATCTGCGCGCTGGCCATGGACCTGATCTGGGGCTACACGGGCATC CTGAGCCTGGGCCATGGGCTTTTCTTCGCGCTGGGCGGCTATGTGATGGGCATGTACCTCATGCGCCAGATCGGCCGCGA CGGCAACTACAAGAGCGACCTGCCCGATTTCATGGTGTTCCTGGACTGGAAGGAGCTGCCCTGGCACTGGGCGCTGTCGG ACAGTTTCATCGCCACGCTGGTGCTGATCGTGGCCGTGCCGGGGCTGGTGGCGTTCGTGTTCGGCTACTTCGCCTTCCGC TCGCGCATCAAGGGGGTGTATTTCTCGATCATCACGCAGGCCATGACGTATGCGGCCATGCTGCTGTTCTTCCGCAACGA GACGGGCTTCGGGGGCAACAACGGCTTCACCGACTTCAAGCGCATCCTGGGCTTTGCCCTAGCCACGCAACACATGCGCA TGCTGCTGTTCGTGCTCACGGGGCTGGCGCTGCTGGGCTTCTTCCTGCTGGGCCGCTGGCTGGTGGGCTCCAGGTTCGGC CGCGTGCTGCAGGCGATCCGCGACGCGGAGACCCGCGTGATGTTCTCGGGCTACTCGCCGCTGCCCTACAAGCTCGCCAT CTGGACCATCAGCGCCATGATGTGCGGCGTGGCCGGCGCGCTCTACGTGCCGCAGGTGTGCATCATCAACCCGGGCGAGA TGAGCGCCGCCAACTCCATCGAGATCGCCGTCTGGGCGGCCGTGGGCGGGCGCGCGACGCTCGCCGGCCCGATCGCGGGG GCCTTCCTCGTCAACGGCGCCAAGAGCTGGCTGACGGTGACGGCGCCGGAGTTCTGGCTGTATTTCCTGGGTGCGCTGTT CATCGCCGTCACGCTGTTCCTGCCGCAGGGCGTGGCGGGGCTGCTGCGCTCGCCCGGCGGATGGCGCGGTCGCATGGCGA AGGCCCTGCGCAAGGAAGAAGGAGGCGCCGCGCGATGA
Upstream 100 bases:
>100_bases GGGACGCCGCCGGCGCGGCGGGGCGGCCCTTGCGCGGCGGCAGCTGGCCTGGGCCGTGACAGTGGCTTCGGCCGCGCGCG ATGCCAAACGCTGAAAAGAT
Downstream 100 bases:
>100_bases CCCCCGATCTCATGGACGAAGGCGCGCGCCGCATCGGGCGCGGCACGGCTGCGCCGGACGCGGGCCGCAGCACCGAGTCC GGCGGCCGCGCCGCGGGCTT
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: Inner-Membrane Translocator; Branched-Chain Amino Acid ABC Transporter Permease Protein; ABC Transporter Permease Protein; Urea ABC Transporter Permease UrtC; Amino Acid Or Sugar ABC Transport System Permease Protein; ABC Transporter ; Branched Chain Amino Acid ABC Transporter Permease; Branched-Chain Amino Acid Transport System Permease Protein; Branched-Chain Amino Acid ABC Transporter Permease; ABC Transporter Permease; Branched-Chain Amino Acid Inner-Membrane Translocator; Branched-Chain Amino Acid Transport Permease; ABC Transporter; Urea ABC Transporter Permease; Permease Of ABC Transporter; ABC Transporter Membrane Spanning Protein; Permease Component Of ABC Transporter; Urea Or Short-Chain Amide ABC Transporter Permease Protein; Amide-Urea Transport System Permease Protein; Branched Chain Amino Acid ABC Transporter Permease Protein; Amide-Urea Transporter Permease Protein; Transmembrane Component Of ABC Transporter; High-Affinity Branched-Chain Amino Acid Transport System; Urea/Short Chain-Amide ABC Transporter Permease Protein; Urea ABC Transporter Permease Protein; ABC Transporter Membrane Protein; Branched-Chain Amino Acid Transporter; ABC-Type Urea Transport System Permease Protein II; Urea Transport System Permease Protein; ABC Transporter Inner-Membrane Translocator; ABC-Type Transport System Permease Protein; ABC Transporter-Like Protein; Integral Membrane Protein; Urea ABC Transporter Inner-Membrane Subunit UrtC; ABC Branched Amino Acid Transporter Permease Component; ABC-Type Branched-Chain Amino Acid Transport System; Branched-Chain Amino Acid Transport System Permease; Permease Protein Of ABC Transporter; Urea Transport System Permease Component Protein; Urea Or Short-Chain Amide ABC Transporter; Permease Transporter Transmembrane Protein; Urea ABC Transport Permease Component UrtC
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MTIPNPIPLPAPAPLLTRGGWTGFIVALIAVCAVAPVLNLWVPAGSAFHLSDYAVALVGKIMCYAICALAMDLIWGYTGI LSLGHGLFFALGGYVMGMYLMRQIGRDGNYKSDLPDFMVFLDWKELPWHWALSDSFIATLVLIVAVPGLVAFVFGYFAFR SRIKGVYFSIITQAMTYAAMLLFFRNETGFGGNNGFTDFKRILGFALATQHMRMLLFVLTGLALLGFFLLGRWLVGSRFG RVLQAIRDAETRVMFSGYSPLPYKLAIWTISAMMCGVAGALYVPQVCIINPGEMSAANSIEIAVWAAVGGRATLAGPIAG AFLVNGAKSWLTVTAPEFWLYFLGALFIAVTLFLPQGVAGLLRSPGGWRGRMAKALRKEEGGAAR
Sequences:
>Translated_385_residues MTIPNPIPLPAPAPLLTRGGWTGFIVALIAVCAVAPVLNLWVPAGSAFHLSDYAVALVGKIMCYAICALAMDLIWGYTGI LSLGHGLFFALGGYVMGMYLMRQIGRDGNYKSDLPDFMVFLDWKELPWHWALSDSFIATLVLIVAVPGLVAFVFGYFAFR SRIKGVYFSIITQAMTYAAMLLFFRNETGFGGNNGFTDFKRILGFALATQHMRMLLFVLTGLALLGFFLLGRWLVGSRFG RVLQAIRDAETRVMFSGYSPLPYKLAIWTISAMMCGVAGALYVPQVCIINPGEMSAANSIEIAVWAAVGGRATLAGPIAG AFLVNGAKSWLTVTAPEFWLYFLGALFIAVTLFLPQGVAGLLRSPGGWRGRMAKALRKEEGGAAR >Mature_384_residues TIPNPIPLPAPAPLLTRGGWTGFIVALIAVCAVAPVLNLWVPAGSAFHLSDYAVALVGKIMCYAICALAMDLIWGYTGIL SLGHGLFFALGGYVMGMYLMRQIGRDGNYKSDLPDFMVFLDWKELPWHWALSDSFIATLVLIVAVPGLVAFVFGYFAFRS RIKGVYFSIITQAMTYAAMLLFFRNETGFGGNNGFTDFKRILGFALATQHMRMLLFVLTGLALLGFFLLGRWLVGSRFGR VLQAIRDAETRVMFSGYSPLPYKLAIWTISAMMCGVAGALYVPQVCIINPGEMSAANSIEIAVWAAVGGRATLAGPIAGA FLVNGAKSWLTVTAPEFWLYFLGALFIAVTLFLPQGVAGLLRSPGGWRGRMAKALRKEEGGAAR
Specific function: Part Of The Binding-Protein-Dependent Transport System For Branched-Chain Amino Acids. Probably Responsible For The Translocation Of The Substrates Across The Membrane. [C]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41744; Mature: 41613
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIPNPIPLPAPAPLLTRGGWTGFIVALIAVCAVAPVLNLWVPAGSAFHLSDYAVALVGK CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH IMCYAICALAMDLIWGYTGILSLGHGLFFALGGYVMGMYLMRQIGRDGNYKSDLPDFMVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEE LDWKELPWHWALSDSFIATLVLIVAVPGLVAFVFGYFAFRSRIKGVYFSIITQAMTYAAM EEHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFFRNETGFGGNNGFTDFKRILGFALATQHMRMLLFVLTGLALLGFFLLGRWLVGSRFG HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVLQAIRDAETRVMFSGYSPLPYKLAIWTISAMMCGVAGALYVPQVCIINPGEMSAANSI HHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCE EIAVWAAVGGRATLAGPIAGAFLVNGAKSWLTVTAPEFWLYFLGALFIAVTLFLPQGVAG EEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCHHH LLRSPGGWRGRMAKALRKEEGGAAR HHCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure TIPNPIPLPAPAPLLTRGGWTGFIVALIAVCAVAPVLNLWVPAGSAFHLSDYAVALVGK CCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH IMCYAICALAMDLIWGYTGILSLGHGLFFALGGYVMGMYLMRQIGRDGNYKSDLPDFMVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEE LDWKELPWHWALSDSFIATLVLIVAVPGLVAFVFGYFAFRSRIKGVYFSIITQAMTYAAM EEHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFFRNETGFGGNNGFTDFKRILGFALATQHMRMLLFVLTGLALLGFFLLGRWLVGSRFG HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVLQAIRDAETRVMFSGYSPLPYKLAIWTISAMMCGVAGALYVPQVCIINPGEMSAANSI HHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCE EIAVWAAVGGRATLAGPIAGAFLVNGAKSWLTVTAPEFWLYFLGALFIAVTLFLPQGVAG EEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCHHH LLRSPGGWRGRMAKALRKEEGGAAR HHCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA