Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120612135
Identifier: 120612135
GI number: 120612135
Start: 3848525
End: 3849517
Strand: Direct
Name: 120612135
Synonym: Aave_3484
Alternate gene names: NA
Gene position: 3848525-3849517 (Clockwise)
Preceding gene: 120612134
Following gene: 120612142
Centisome position: 71.9
GC content: 74.42
Gene sequence:
>993_bases ATGCTGGACAACCTGACGCCCTTCGCCGCGGAGCTGCTGCCGGGCCACCGGCCGGACGGCAGCGCGTGCCGGACGCTGGT CATCAAGGCCACGCTGGATTTCGCCGGCCGGCCCGTCGCCCAGGGCGGCGCATTGCCCATCTACCGCGGCGACGCGTTTT TCGCGGAGGACGGGCTGCAGGGCACCGTGCGGCACGAGGCCGACCTCGCCCCCTTCAAGCCGCGGGTGGACGTGGTGTTC AACGGCTTCGCCTACGCGCCCGGAGGCCGTCCGGCGGACCGCTTCGACGCGGGCCTGTCCATCGGCGCGGAAACCCGCAC GGTGCGCGTCCACGGGCGGCGCGTGTGGCGCCGGCGCATGGGACTGTTCCCCGTGGCGGAGGCCTGCGAGCCGGCGCTGC GCGTGCCGCTGGTGTACGGCCTCGCCTTCGGCGGACAGGACGCGGAAGACCCGATGGCCTTCCATGCCGGCAATCCGTCG GGCACCGGCTTCAGCGCCGGGGTGCCGCGGGACGGCGCGCCGCTGCACCAGATCGAGTGGGCGGATGCGCCCGTGCGCCT GCCCTCCGGCAATGACCCGCCCGCGGGCTTCGGCTGCATCGGACGCACGTGGCTGCCCCGCCGCGCCCTGTGGGGCAGCT ATGCCCCGCAGGAGCTGCAGCAGGCGCCCGGCCTCGTGGCGCGCATGCCGGCCACCTTCGATCCGGCGGCCTGGAACTGC GCGCACCCGCGCATGCAGTTCGCGCCGGGACAGGTCCGGCCGGGCACGCGCATCCGCTGGAAGCACCTGTGCGCCCATGG CGAGGGGGAAACCGCCGTGCCGGACCTGCAGCCGGCCGTGTCCTGGGCGGTGCGGGGCGAGCGCGGCACCGTCCGCCCCG CGTTCGACACCCTCGTGCTGGAGCCCGAGCACGGCCACATGGTGGTGGTCTGGCGCCACACGTTCGACAGGGAAGCCGCC CGGTACCTGGAAAGCCTGCAGGTGCATCTCTGA
Upstream 100 bases:
>100_bases CGGGGCACGGGCAGTTCGATGACGTTCATGCGAAAAGGCGCGCCGCAGGCCGCGGCGCGCGTGGGATCAAAGACAATGCC GGGCAGGAGGATCCCACCCG
Downstream 100 bases:
>100_bases CGGGCGCTCAGTTGATGCGGACCTCGGCCGCATCGATGTCCACGAGGTCGCGCGCGTCGTGCTCGATCTTCAGGGCCACG AGGCGCGCGAGACCCTGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MLDNLTPFAAELLPGHRPDGSACRTLVIKATLDFAGRPVAQGGALPIYRGDAFFAEDGLQGTVRHEADLAPFKPRVDVVF NGFAYAPGGRPADRFDAGLSIGAETRTVRVHGRRVWRRRMGLFPVAEACEPALRVPLVYGLAFGGQDAEDPMAFHAGNPS GTGFSAGVPRDGAPLHQIEWADAPVRLPSGNDPPAGFGCIGRTWLPRRALWGSYAPQELQQAPGLVARMPATFDPAAWNC AHPRMQFAPGQVRPGTRIRWKHLCAHGEGETAVPDLQPAVSWAVRGERGTVRPAFDTLVLEPEHGHMVVVWRHTFDREAA RYLESLQVHL
Sequences:
>Translated_330_residues MLDNLTPFAAELLPGHRPDGSACRTLVIKATLDFAGRPVAQGGALPIYRGDAFFAEDGLQGTVRHEADLAPFKPRVDVVF NGFAYAPGGRPADRFDAGLSIGAETRTVRVHGRRVWRRRMGLFPVAEACEPALRVPLVYGLAFGGQDAEDPMAFHAGNPS GTGFSAGVPRDGAPLHQIEWADAPVRLPSGNDPPAGFGCIGRTWLPRRALWGSYAPQELQQAPGLVARMPATFDPAAWNC AHPRMQFAPGQVRPGTRIRWKHLCAHGEGETAVPDLQPAVSWAVRGERGTVRPAFDTLVLEPEHGHMVVVWRHTFDREAA RYLESLQVHL >Mature_330_residues MLDNLTPFAAELLPGHRPDGSACRTLVIKATLDFAGRPVAQGGALPIYRGDAFFAEDGLQGTVRHEADLAPFKPRVDVVF NGFAYAPGGRPADRFDAGLSIGAETRTVRVHGRRVWRRRMGLFPVAEACEPALRVPLVYGLAFGGQDAEDPMAFHAGNPS GTGFSAGVPRDGAPLHQIEWADAPVRLPSGNDPPAGFGCIGRTWLPRRALWGSYAPQELQQAPGLVARMPATFDPAAWNC AHPRMQFAPGQVRPGTRIRWKHLCAHGEGETAVPDLQPAVSWAVRGERGTVRPAFDTLVLEPEHGHMVVVWRHTFDREAA RYLESLQVHL
Specific function: Unknown
COG id: COG5351
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35888; Mature: 35888
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDNLTPFAAELLPGHRPDGSACRTLVIKATLDFAGRPVAQGGALPIYRGDAFFAEDGLQ CCCCCCCHHHHHCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCEEEEECCEEEECCCCC GTVRHEADLAPFKPRVDVVFNGFAYAPGGRPADRFDAGLSIGAETRTVRVHGRRVWRRRM EEECCCCCCCCCCCCEEEEECCEEECCCCCCHHHHHCCCCCCCCEEEEEEHHHHHHHHHC GLFPVAEACEPALRVPLVYGLAFGGQDAEDPMAFHAGNPSGTGFSAGVPRDGAPLHQIEW CCCCCHHHCCHHHHCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEC ADAPVRLPSGNDPPAGFGCIGRTWLPRRALWGSYAPQELQQAPGLVARMPATFDPAAWNC CCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHCCCEEEECCCCCCCCCCCC AHPRMQFAPGQVRPGTRIRWKHLCAHGEGETAVPDLQPAVSWAVRGERGTVRPAFDTLVL CCCCCCCCCCCCCCCCCEEHHHHEECCCCCCCCCCCCHHHHEEEECCCCCCCCCCEEEEE EPEHGHMVVVWRHTFDREAARYLESLQVHL CCCCCCEEEEEECCCCHHHHHHHHHHHCCC >Mature Secondary Structure MLDNLTPFAAELLPGHRPDGSACRTLVIKATLDFAGRPVAQGGALPIYRGDAFFAEDGLQ CCCCCCCHHHHHCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCEEEEECCEEEECCCCC GTVRHEADLAPFKPRVDVVFNGFAYAPGGRPADRFDAGLSIGAETRTVRVHGRRVWRRRM EEECCCCCCCCCCCCEEEEECCEEECCCCCCHHHHHCCCCCCCCEEEEEEHHHHHHHHHC GLFPVAEACEPALRVPLVYGLAFGGQDAEDPMAFHAGNPSGTGFSAGVPRDGAPLHQIEW CCCCCHHHCCHHHHCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEC ADAPVRLPSGNDPPAGFGCIGRTWLPRRALWGSYAPQELQQAPGLVARMPATFDPAAWNC CCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHCCCEEEECCCCCCCCCCCC AHPRMQFAPGQVRPGTRIRWKHLCAHGEGETAVPDLQPAVSWAVRGERGTVRPAFDTLVL CCCCCCCCCCCCCCCCCEEHHHHEECCCCCCCCCCCCHHHHEEEECCCCCCCCCCEEEEE EPEHGHMVVVWRHTFDREAARYLESLQVHL CCCCCCEEEEEECCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA